# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1oqcA	125	4.65e-14	a.24.15.1	87264
1jr8A	117	9.68e-14	a.24.15.1	67115
2aj0A	71	2.760		
1wkqA	164	6.112	c.97.1.2	109393
1cttA	294	6.505	c.97.1.1,c.97.1.1	36022,36023
1wn5A	130	7.442	c.97.1.1	121082
2nytA	190	8.259		
1cc8A	73	10.77	d.58.17.1	39343
1ctt	294	11.82		
2z3hA	130	13.56		
2h8lA	252	14.60		
2q3pA	112	15.75	d.58.4.4	139798
2a8nA	144	22.66	c.97.1.2	126408
2nx8A	179	22.84		
1j55A	95	24.92	a.39.1.2	77078
2vlgA	111	24.93		
1mwyA	73	26.21	d.58.17.1	79616
1va6A	518	27.10	d.128.1.4	113598
2sasA	185	27.25	a.39.1.5	17258
1vkeA	133	28.34	a.152.1.2	108650
1z3aA	168	29.64	c.97.1.2	124396
1c8cA	64	31.19	b.34.13.1	59084
1ovxA	67	32.08	g.39.1.11	93622
2hjnA	236	32.85		
2q01A	497	34.08		
2ds5A	51	35.17	g.39.1.11	131681
2af4C	333	36.31	c.77.1.5	126656
1xyiA	66	36.51		
1tiyA	164	37.53	c.97.1.2	107012
2d58A	107	38.37		
2eppA	66	38.96		
2fqhA	109	39.03		
2i3sB	36	39.27		
1fe0A	68	39.36	d.58.17.1	39345
2ahmA	88	41.58	a.8.9.1	126760
2hvwA	184	42.27		
2b3jA	159	42.34	c.97.1.2	127787
1azpA	66	43.23	b.34.13.1	37467
1ubkL	534	43.35	e.18.1.1	88422
2jwhA	48	43.36		
1uwzA	136	43.68	c.97.1.1	108081
1rp4A	389	43.87	a.227.1.1	105027
2qeuA	141	45.73		
1cf7B	95	46.32	a.4.5.17	16152
1jtkA	136	46.59	c.97.1.1	71862
3b8fA	142	47.80		
1njgA	250	48.07	c.37.1.20	85785
1y3jA	77	49.68		
1a5t	334	50.09		
2oy9A	98	50.51		
1zu1A	127	53.09		
1wy9A	147	53.62		
2g84A	197	53.87	c.97.1.2	134766
1p6oA	161	54.31	c.97.1.2	94185
1v1dA	31	54.66	j.6.1.1	119817
2h21A	440	57.85	a.166.1.1,b.85.7.3	135976,135977
2fr5A	146	59.13	c.97.1.1	133965
1n62A	166	60.26	a.56.1.1,d.15.4.2	80090,80091
1a99A	344	60.58	c.94.1.1	35812
1r5tA	142	62.01	c.97.1.1	104812
2ezhA	75	63.14	a.4.1.2	16029
2c2xA	281	63.61		
1oohA	126	65.39	a.39.2.1	93383
1gu9A	177	67.17	a.152.1.1	65540
2p09A	78	67.68		
1vq2A	193	68.01	c.97.1.2	114004
1dxsA	80	69.07	a.60.1.2	17944
1e8gA	560	71.54	d.58.32.1,d.145.1.1	39455,41718
2prrA	197	71.96		
2agaA	190	75.05		
1mwwA	128	75.56	d.80.1.4	91483
1a5tA	334	76.05	a.80.1.1,c.37.1.20	18450,32423
1ykhA	108	76.97	a.252.1.2	123518
1osdA	72	77.33	d.58.17.1	104022
4mbp	370	77.67		
1nhyA	219	78.46	a.45.1.1,c.47.1.5	80520,80521
1pi1A	185	84.25	a.29.7.1	94699
1avsA	90	85.09	a.39.1.5	17226
1ppt	36	85.65		
1tr0A	108	85.74	d.58.4.4	107261
1wlzA	105	86.02	a.39.1.7	121024
1uw1A	80	87.55	k.42.1.1	100069
2j9wA	102	88.40		
1d4vA	117	89.07	g.24.1.1,g.24.1.1,g.24.1.1	44915,44916,44917
2ebdA	309	89.18