# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oqcA 125 7.21e-14 a.24.15.1 87264 1jr8A 117 1.61e-13 a.24.15.1 67115 2aj0A 71 4.010 1wkqA 164 6.483 c.97.1.2 109393 1cttA 294 7.532 c.97.1.1,c.97.1.1 36022,36023 1wn5A 130 9.477 c.97.1.1 121082 2nytA 190 10.78 1ctt 294 12.85 2q3pA 112 13.00 d.58.4.4 139798 1cc8A 73 13.03 d.58.17.1 39343 2h8lA 252 14.99 2a8nA 144 17.72 c.97.1.2 126408 2z3hA 130 19.51 2nx8A 179 19.63 1z3aA 168 22.25 c.97.1.2 124396 2fqhA 109 26.82 1j55A 95 27.60 a.39.1.2 77078 2vlgA 111 28.87 1va6A 518 30.49 d.128.1.4 113598 1mwyA 73 31.91 d.58.17.1 79616 2b3jA 159 33.78 c.97.1.2 127787 1ovxA 67 35.12 g.39.1.11 93622 2hjnA 236 35.40 2ahmA 88 35.80 a.8.9.1 126760 2eppA 66 36.05 1vkeA 133 38.47 a.152.1.2 108650 2q01A 497 41.14 1tiyA 164 41.37 c.97.1.2 107012 1cf7B 95 41.80 a.4.5.17 16152 2g84A 197 43.63 c.97.1.2 134766 2ds5A 51 44.17 g.39.1.11 131681 2hvwA 184 44.17 1ubkL 534 44.53 e.18.1.1 88422 1c8cA 64 44.54 b.34.13.1 59084 2af4C 333 45.45 c.77.1.5 126656 1zu1A 127 46.12 1p6oA 161 46.21 c.97.1.2 94185 1xyiA 66 49.83 1uwzA 136 50.40 c.97.1.1 108081 1rp4A 389 50.42 a.227.1.1 105027 3b8fA 142 52.38 1jtkA 136 52.38 c.97.1.1 71862 2jwhA 48 53.37 2sasA 185 54.70 a.39.1.5 17258 1y3jA 77 54.79 1d4vA 117 54.83 g.24.1.1,g.24.1.1,g.24.1.1 44915,44916,44917 2i3sB 36 56.70 2p09A 78 56.74 2qeuA 141 56.97 1fe0A 68 57.57 d.58.17.1 39345 1azpA 66 57.72 b.34.13.1 37467 2agaA 190 58.80 1v1dA 31 58.91 j.6.1.1 119817 2d58A 107 60.15 1a5t 334 60.26 1r5tA 142 60.59 c.97.1.1 104812 1n62A 166 61.28 a.56.1.1,d.15.4.2 80090,80091 1vq2A 193 61.40 c.97.1.2 114004 1a99A 344 63.99 c.94.1.1 35812 1njgA 250 65.73 c.37.1.20 85785 1wy9A 147 68.92 1dxsA 80 69.07 a.60.1.2 17944 1tdpA 111 69.60 a.29.8.1 106781 2oy9A 98 70.88 1tr0A 108 72.75 d.58.4.4 107261 2h21A 440 74.66 a.166.1.1,b.85.7.3 135976,135977 1qhoA 686 76.02 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21844,22513,27751,28738 2fr5A 146 76.98 c.97.1.1 133965 1uw1A 80 78.68 k.42.1.1 100069 1oohA 126 79.07 a.39.2.1 93383 1e8gA 560 79.59 d.58.32.1,d.145.1.1 39455,41718 1a5tA 334 79.67 a.80.1.1,c.37.1.20 18450,32423 2yrmA 43 79.88 1ykhA 108 80.74 a.252.1.2 123518 2prrA 197 85.86 1rwjA 82 86.54 a.138.1.1 105114 2dx8A 67 86.59 1pi1A 185 87.84 a.29.7.1 94699 2ezhA 75 88.37 a.4.1.2 16029