# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1oqcA	125	5.49e-14	a.24.15.1	87264
1jr8A	117	1.25e-13	a.24.15.1	67115
2aj0A	71	2.936		
1wkqA	164	5.140	c.97.1.2	109393
1cttA	294	6.705	c.97.1.1,c.97.1.1	36022,36023
1wn5A	130	8.260	c.97.1.1	121082
2nytA	190	8.314		
1cc8A	73	11.14	d.58.17.1	39343
1ctt	294	12.11		
2h8lA	252	13.51		
2q3pA	112	14.47	d.58.4.4	139798
2z3hA	130	15.37		
1z3aA	168	17.18	c.97.1.2	124396
2nx8A	179	17.57		
2a8nA	144	17.64	c.97.1.2	126408
1mwyA	73	22.92	d.58.17.1	79616
1va6A	518	26.13	d.128.1.4	113598
1tiyA	164	26.54	c.97.1.2	107012
2b3jA	159	27.53	c.97.1.2	127787
2sasA	185	30.14	a.39.1.5	17258
1vkeA	133	30.64	a.152.1.2	108650
1p6oA	161	30.86	c.97.1.2	94185
1ovxA	67	31.38	g.39.1.11	93622
1j55A	95	31.60	a.39.1.2	77078
2hvwA	184	32.87		
1y3jA	77	33.07		
2ahmA	88	37.08	a.8.9.1	126760
2af4C	333	37.22	c.77.1.5	126656
2fqhA	109	38.65		
2vlgA	111	38.65		
2g84A	197	40.34	c.97.1.2	134766
1c8cA	64	41.30	b.34.13.1	59084
1vq2A	193	41.97	c.97.1.2	114004
2q01A	497	45.43		
2jwhA	48	46.09		
2ds5A	51	46.28	g.39.1.11	131681
1uwzA	136	46.74	c.97.1.1	108081
1fe0A	68	47.24	d.58.17.1	39345
1rp4A	389	47.25	a.227.1.1	105027
2hjnA	236	47.99		
2qeuA	141	48.04		
1xyiA	66	49.63		
1jtkA	136	50.14	c.97.1.1	71862
1zu1A	127	51.71		
2eppA	66	52.27		
1cf7B	95	52.59	a.4.5.17	16152
1v1dA	31	53.59	j.6.1.1	119817
1a99A	344	55.44	c.94.1.1	35812
2i3sB	36	55.47		
1d4vA	117	56.68	g.24.1.1,g.24.1.1,g.24.1.1	44915,44916,44917
3b8fA	142	57.67		
1njgA	250	57.76	c.37.1.20	85785
1ubkL	534	57.83	e.18.1.1	88422
1azpA	66	58.78	b.34.13.1	37467
1r5tA	142	66.80	c.97.1.1	104812
2d58A	107	68.46		
2h21A	440	70.66	a.166.1.1,b.85.7.3	135976,135977
2oy9A	98	71.94		
1tr0A	108	72.34	d.58.4.4	107261
1avsA	90	73.19	a.39.1.5	17226
2fr5A	146	73.63	c.97.1.1	133965
3beyA	96	73.78		
1dxsA	80	74.97	a.60.1.2	17944
1gpuA	680	75.90	c.36.1.10,c.36.1.6,c.48.1.1	65454,65455,65456
1osdA	72	76.62	d.58.17.1	104022
1oohA	126	76.95	a.39.2.1	93383
1qhoA	686	79.27	b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1	21844,22513,27751,28738
2prrA	197	79.95		
1a5tA	334	80.19	a.80.1.1,c.37.1.20	18450,32423
1wy9A	147	80.42		
1ykhA	108	80.76	a.252.1.2	123518
1gu9A	177	81.22	a.152.1.1	65540
1wwrA	171	82.46	c.97.1.2	121366
1vlbA	907	83.42	a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1	108739,108740,108741,108742
1n62A	166	83.45	a.56.1.1,d.15.4.2	80090,80091
1e8gA	560	84.59	d.58.32.1,d.145.1.1	39455,41718
2agaA	190	85.25		
1ppt	36	85.26		
1a5t	334	87.32		
2ezhA	75	87.39	a.4.1.2	16029
2p09A	78	87.74