# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1oqcA	125	8.49e-17	a.24.15.1	87264
1jr8A	117	1.90e-16	a.24.15.1	67115
2aj0A	71	1.584		
2nytA	190	3.694		
1wn5A	130	4.684	c.97.1.1	121082
2b3jA	159	6.062	c.97.1.2	127787
1p6oA	161	6.443	c.97.1.2	94185
1cc8A	73	6.589	d.58.17.1	39343
1z3aA	168	7.834	c.97.1.2	124396
2z3hA	130	8.241		
1wkqA	164	8.399	c.97.1.2	109393
2g84A	197	8.794	c.97.1.2	134766
2h8lA	252	9.369		
2nx8A	179	9.677		
1vq2A	193	10.29	c.97.1.2	114004
2q3pA	112	10.90	d.58.4.4	139798
1r5tA	142	10.93	c.97.1.1	104812
1uwzA	136	11.68	c.97.1.1	108081
2af4C	333	12.21	c.77.1.5	126656
1gu9A	177	13.62	a.152.1.1	65540
1jtkA	136	13.88	c.97.1.1	71862
1wwrA	171	16.14	c.97.1.2	121366
1fe0A	68	18.32	d.58.17.1	39345
2hvwA	184	20.58		
2a8nA	144	20.71	c.97.1.2	126408
1e8gA	560	20.98	d.58.32.1,d.145.1.1	39455,41718
2dsyA	87	21.42		
2ezhA	75	22.29	a.4.1.2	16029
1lw1A	177	22.57	a.152.1.1	74290
2nllB	103	23.79	g.39.1.2	45115
1cttA	294	26.36	c.97.1.1,c.97.1.1	36022,36023
1iioA	84	27.80	a.39.4.1	66150
1itg	166	27.92		
1ovnA	248	29.58	a.71.1.1,c.47.1.7	93602,93603
1v32A	101	29.98	a.42.1.1	100277
2fr5A	146	30.53	c.97.1.1	133965
1xvqA	175	34.30	c.47.1.10	116094
1mwyA	73	35.41	d.58.17.1	79616
2sasA	185	36.75	a.39.1.5	17258
1nhyA	219	38.63	a.45.1.1,c.47.1.5	80520,80521
1dszB	85	39.55	g.39.1.2	45108
1osdA	72	41.45	d.58.17.1	104022
1kp8A	547	41.67	a.129.1.1,c.8.5.1,d.56.1.1	84414,84415,84416
3b8fA	142	43.08		
2ebdA	309	43.47		
1tr0A	108	44.09	d.58.4.4	107261
1faoA	126	47.69	b.55.1.1	26974
1tdpA	111	49.27	a.29.8.1	106781
1tiyA	164	49.27	c.97.1.2	107012
1ctt	294	49.50		
1y2tA	142	56.31	b.97.1.2	116407
1c8cA	64	58.78	b.34.13.1	59084
1y3jA	77	60.66		
2gcfA	73	61.90		
1knyA	253	63.88	a.24.16.1,d.218.1.1	75896,75897
1dszA	86	64.34	g.39.1.2	45129
3b8mA	280	65.30		
2cx4A	164	65.99	c.47.1.10	130973
1i5gA	144	69.15	c.47.1.10	61784
2hanB	119	70.34	g.39.1.2	136292
1bl3A	160	71.43	c.55.3.2	33655
2bijA	305	77.55		
1azpA	66	77.69	b.34.13.1	37467
1g8yA	279	78.46	c.37.1.11	32302
1qxhA	167	82.17	c.47.1.10	96528
1izoA	417	82.75	a.104.1.1	83851
2ahmA	88	83.81	a.8.9.1	126760
1oruA	195	84.80	b.58.1.2	93464
1rp4A	389	87.92	a.227.1.1	105027
1yjrA	75	88.52