# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oqcA 125 1.76e-13 a.24.15.1 87264 1jr8A 117 4.27e-13 a.24.15.1 67115 2aj0A 71 1.045 1wn5A 130 2.053 c.97.1.1 121082 2nytA 190 2.108 2sasA 185 3.271 a.39.1.5 17258 1wkqA 164 3.573 c.97.1.2 109393 1cttA 294 3.871 c.97.1.1,c.97.1.1 36022,36023 2h8lA 252 4.377 1ctt 294 5.390 2z3hA 130 6.312 1cc8A 73 6.407 d.58.17.1 39343 2b3jA 159 7.431 c.97.1.2 127787 1z3aA 168 7.660 c.97.1.2 124396 2fqhA 109 7.781 2a8nA 144 9.405 c.97.1.2 126408 2nx8A 179 9.498 1p6oA 161 9.615 c.97.1.2 94185 2q01A 497 9.663 1va6A 518 9.878 d.128.1.4 113598 2eppA 66 10.55 2ds5A 51 10.92 g.39.1.11 131681 1ovxA 67 11.54 g.39.1.11 93622 1zu1A 127 12.00 2p09A 78 13.53 1r5tA 142 14.51 c.97.1.1 104812 1uwzA 136 14.58 c.97.1.1 108081 1wwrA 171 14.70 c.97.1.2 121366 2ahmA 88 14.87 a.8.9.1 126760 1jtkA 136 15.82 c.97.1.1 71862 2vlgA 111 16.57 2agaA 190 16.59 1c8cA 64 16.74 b.34.13.1 59084 2fiyA 309 16.90 e.59.1.1 133540 1mwyA 73 18.50 d.58.17.1 79616 2g84A 197 18.58 c.97.1.2 134766 1a99A 344 19.08 c.94.1.1 35812 2dx8A 67 19.51 1y3jA 77 19.58 1uw1A 80 20.51 k.42.1.1 100069 1rp4A 389 20.59 a.227.1.1 105027 3b8fA 142 20.94 2yrmA 43 21.23 1smbA 154 21.28 d.111.1.1 105756 1azpA 66 21.50 b.34.13.1 37467 1rwjA 82 21.71 a.138.1.1 105114 1x9zA 188 21.98 d.292.1.1 115019 2fr5A 146 22.65 c.97.1.1 133965 1brvA 32 22.87 j.33.1.1 46235 2hvwA 184 22.96 1j55A 95 23.27 a.39.1.2 77078 2f2lA 167 23.37 d.118.1.1 132843 1xyiA 66 23.45 2hjnA 236 24.07 1znfA 25 24.25 g.37.1.1 45036 1nhyA 219 24.55 a.45.1.1,c.47.1.5 80520,80521 2q3pA 112 27.19 d.58.4.4 139798 1vq2A 193 27.86 c.97.1.2 114004 2oy9A 98 27.92 2iazA 113 28.31 2i3sB 36 28.80 1ubkL 534 29.00 e.18.1.1 88422 1ykhA 108 29.19 a.252.1.2 123518 1qnxA 209 29.40 d.111.1.1 40914 1fe0A 68 29.55 d.58.17.1 39345 2d58A 107 29.57 2ezhA 75 29.63 a.4.1.2 16029 2jwhA 48 29.91 2heuA 401 30.48 1wlzA 105 31.54 a.39.1.7 121024 1d4vA 117 32.48 g.24.1.1,g.24.1.1,g.24.1.1 44915,44916,44917 1cf7B 95 33.79 a.4.5.17 16152 2elxA 35 36.71 1faoA 126 36.79 b.55.1.1 26974 1njqA 39 37.04 g.37.1.3 85822 1wilA 89 39.17 g.50.1.3 114676 1osdA 72 40.35 d.58.17.1 104022 1dlcA 584 40.91 b.18.1.3,b.77.2.1,f.1.3.1 23719,27976,43391 1ae7A 119 41.26 a.133.1.2 19553 2fipA 115 41.57 2c2xA 281 42.37 1anf 370 43.52 2f2lX 167 44.12 d.118.1.1 132844 2qzcA 214 46.56 1v1dA 31 46.95 j.6.1.1 119817 2eloA 37 47.32 3c8yA 574 47.51 1dxsA 80 47.52 a.60.1.2 17944 2g3kA 94 49.02 a.24.28.1 134562 2e01A 457 49.08 2j9wA 102 50.03 1gpuA 680 50.06 c.36.1.10,c.36.1.6,c.48.1.1 65454,65455,65456 4mbp 370 50.81 1u53A 196 51.41 2f6hX 419 51.51 1mhqA 148 51.79 a.118.9.2 84973 1e7aA 585 51.85 a.126.1.1,a.126.1.1,a.126.1.1 19360,19361,19362 1n5uA 585 52.23 a.126.1.1,a.126.1.1,a.126.1.1 85339,85340,85341 2bijA 305 52.61 1wy9A 147 52.90 1ldjB 90 52.92 g.44.1.1 73850 1tiyA 164 54.11 c.97.1.2 107012 2f5gA 133 55.40 d.58.57.1 132991 1kz7A 353 56.26 a.87.1.1,b.55.1.1 73333,73334 2dxnA 274 57.18 1a5tA 334 59.98 a.80.1.1,c.37.1.20 18450,32423 1sxrA 183 60.16 d.118.1.1 106101 1d2vC 466 60.33 1foeA 377 60.57 a.87.1.1,b.55.1.1 18517,26969 2ebdA 309 60.69 2pqxA 245 61.03 3craA 265 61.30 2aalA 131 63.05 d.80.1.6 126483 2h21A 440 63.19 a.166.1.1,b.85.7.3 135976,135977 1ei7A 158 64.20 a.24.5.1 16584 2jrpA 81 64.62 2dsyA 87 65.62 1gu9A 177 66.33 a.152.1.1 65540 1zejA 293 67.42 2dfkA 402 67.76 1gyxA 76 67.87 d.80.1.1 76387 1s1hN 36 68.44 i.1.1.1 105166 1wrdA 103 69.09 1g2fC 90 69.60 k.12.1.1 60222 2hi7B 176 72.73 2ouiA 360 72.92 2pd2A 108 74.13 1vf6C 72 74.55 a.194.1.1 100602 1bi6H 41 75.22 g.3.12.1 44340 1u8bA 133 75.33 2pu9A 110 75.35 1v74B 87 75.42 a.24.20.1 100443 1bkcE 256 75.57 d.92.1.10 40333 2q2gA 180 75.67 1jvrA 137 75.86 a.61.1.2 18132 1wpkA 146 76.23 1pi1A 185 76.63 a.29.7.1 94699 2js5A 71 77.43 1oohA 126 77.87 a.39.2.1 93383 1a1hA 90 78.79 g.37.1.1,g.37.1.1,g.37.1.1 45004,45005,45006 1ecmA 109 79.05 a.130.1.1 19492 2i13A 190 79.87 k.12.1.1 136964 1a1gA 90 80.13 g.37.1.1,g.37.1.1,g.37.1.1 45010,45011,45012 1izoA 417 80.22 a.104.1.1 83851 1avsA 90 80.92 a.39.1.5 17226 2z3tA 425 81.58 2gloA 59 85.14 2hdpA 63 85.64 1ji7A 89 86.25 a.60.1.1 71682 1zaaC 87 86.80 g.37.1.1,g.37.1.1,g.37.1.1 45013,45014,45015 2czrA 226 87.19 1lu4A 136 88.29 c.47.1.10 91124 2riqA 160 88.89 1x3zA 335 88.90 d.3.1.4 121673 1d66A 66 89.73 g.38.1.1,h.1.3.1 45076,45510