# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oqcA 125 6.20e-22 a.24.15.1 87264 1jr8A 117 3.43e-21 a.24.15.1 67115 1cttA 294 2.186 c.97.1.1,c.97.1.1 36022,36023 2a8nA 144 2.411 c.97.1.2 126408 2aj0A 71 2.590 1ubkL 534 2.620 e.18.1.1 88422 2in1A 175 3.291 d.20.1.4 137521 1ctt 294 3.528 1ew2A 513 4.069 c.76.1.1 59525 2fqhA 109 6.466 2vgaA 207 6.665 2nytA 190 6.928 1cc8A 73 8.213 d.58.17.1 39343 1d8wA 426 8.958 c.1.15.2 29394 2z3hA 130 9.944 1wkqA 164 11.41 c.97.1.2 109393 2q2gA 180 12.31 1fjmA 330 12.60 d.159.1.3 42082 2ch5A 347 13.53 c.55.1.5,c.55.1.5 130453,130454 1gpuA 680 14.05 c.36.1.10,c.36.1.6,c.48.1.1 65454,65455,65456 1avsA 90 16.43 a.39.1.5 17226 5eauA 548 16.50 a.102.4.1,a.128.1.3 18851,19443 1jk0A 419 16.54 a.25.1.2 63142 1gowA 489 18.22 c.1.8.4 28981 1z3aA 168 19.02 c.97.1.2 124396 1qtwA 285 22.53 c.1.15.1 29392 2nx8A 179 24.40 1k9uA 78 25.02 a.39.1.10 84348 1a2xA 159 27.72 a.39.1.5 17251 2bg9E 370 28.01 1p6oA 161 28.29 c.97.1.2 94185 5eau 548 28.53 2gv5A 161 29.48 2c9eA 327 29.96 2d1cA 496 30.23 1k3pA 426 30.45 a.103.1.1 77237 1xwl 580 31.05 1e79G 272 31.13 c.49.2.1 33158 1cf7B 95 31.82 a.4.5.17 16152 2pnkA 428 32.08 2i0kA 561 32.20 1j55A 95 33.61 a.39.1.2 77078 2hvwA 184 35.59 1ldjB 90 36.53 g.44.1.1 73850 2qr3A 140 38.70 2hjsA 340 40.63 c.2.1.3,d.81.1.1 136547,136548 2eppA 66 41.01 1ua7A 422 42.20 b.71.1.1,c.1.8.1 107759,107760 1ycdA 243 42.33 1mhyD 521 43.44 a.25.1.2 16780 2d58A 107 43.95 1y8qA 346 45.50 2af4C 333 45.78 c.77.1.5 126656 2fiyA 309 46.05 e.59.1.1 133540 1xviA 275 46.33 c.108.1.10 116088 2gsaA 432 46.41 c.67.1.4 34446 2ahmA 88 46.85 a.8.9.1 126760 2j89A 261 47.09 2p09A 78 47.58 3bg1B 442 47.68 2hpuA 175 48.17 1d8cA 723 49.02 c.1.13.1 29325 2g3vA 208 49.43 1r5tA 142 54.88 c.97.1.1 104812 1ovxA 67 55.61 g.39.1.11 93622 1uwzA 136 57.61 c.97.1.1 108081 1g0dA 695 57.65 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 60166,60167,60168,60169 2v7kA 361 57.71 2dfkA 402 58.15 2ds5A 51 58.26 g.39.1.11 131681 1j3gA 187 59.47 d.118.1.1 77075 2qm8A 337 60.21 1tuhA 156 63.41 d.17.4.11 107345 1jtkA 136 64.77 c.97.1.1 71862 1lu4A 136 64.97 c.47.1.10 91124 2g84A 197 65.21 c.97.1.2 134766 1t3cA 421 66.63 d.92.1.7 106343 1a99A 344 67.25 c.94.1.1 35812 2a4dA 160 67.55 d.20.1.1 126152 2vlgA 111 67.81 2jamA 304 69.44 2heuA 401 69.75 1gw5S 142 69.90 d.110.4.2 70633 1xvwA 160 70.03 c.47.1.10 122387 2prrA 197 71.30 2eqkA 85 73.29 2agaA 190 75.68 1amk 251 77.47 1zowA 313 79.73 1dfaA 454 80.99 b.86.1.2,d.95.2.2,d.95.2.2 28375,40575,40576 1ei6A 406 81.96 c.76.1.4 90443 2hjnA 236 82.15 1ywsA 82 82.52 g.41.17.1 124163 1xvlA 321 83.04 c.92.2.2 122380 2bl0C 142 83.42 1uw1A 80 84.90 k.42.1.1 100069 2ffeA 311 85.13 c.143.1.1 133381 1uby 367 85.82 2uuqA 414 86.41 2oatA 439 87.14 c.67.1.4 34452 1mwyA 73 87.67 d.58.17.1 79616 1foeA 377 88.02 a.87.1.1,b.55.1.1 18517,26969 1d2vC 466 89.41 1hrdA 449 89.91 c.2.1.7,c.58.1.1 30219,33867