# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1oqcA	125	1.24e-13	a.24.15.1	87264
1jr8A	117	3.04e-13	a.24.15.1	67115
2aj0A	71	1.806		
1wn5A	130	3.560	c.97.1.1	121082
2nytA	190	3.957		
1cttA	294	4.789	c.97.1.1,c.97.1.1	36022,36023
1wkqA	164	5.164	c.97.1.2	109393
2h8lA	252	7.134		
1ctt	294	7.564		
1z3aA	168	8.361	c.97.1.2	124396
2b3jA	159	9.727	c.97.1.2	127787
1cc8A	73	9.922	d.58.17.1	39343
2sasA	185	10.50	a.39.1.5	17258
2nx8A	179	10.54		
2a8nA	144	10.70	c.97.1.2	126408
2z3hA	130	10.82		
2q3pA	112	12.25	d.58.4.4	139798
1p6oA	161	14.48	c.97.1.2	94185
2fqhA	109	16.85		
2g84A	197	20.04	c.97.1.2	134766
2eppA	66	20.95		
2q01A	497	22.53		
1wwrA	171	23.14	c.97.1.2	121366
2ahmA	88	23.63	a.8.9.1	126760
2ds5A	51	23.75	g.39.1.11	131681
2vlgA	111	24.94		
1va6A	518	24.98	d.128.1.4	113598
1uwzA	136	26.43	c.97.1.1	108081
1r5tA	142	27.26	c.97.1.1	104812
1jtkA	136	28.54	c.97.1.1	71862
2hvwA	184	28.66		
1ovxA	67	30.43	g.39.1.11	93622
1a99A	344	32.42	c.94.1.1	35812
1zu1A	127	33.04		
2dx8A	67	34.27		
1c8cA	64	34.28	b.34.13.1	59084
1mwyA	73	34.44	d.58.17.1	79616
1vq2A	193	34.99	c.97.1.2	114004
2agaA	190	35.41		
2p09A	78	35.67		
2iazA	113	36.67		
1y3jA	77	36.72		
3b8fA	142	38.79		
2fr5A	146	40.62	c.97.1.1	133965
1tr0A	108	40.66	d.58.4.4	107261
1fe0A	68	41.75	d.58.17.1	39345
1azpA	66	42.91	b.34.13.1	37467
2jwhA	48	43.81		
2fiyA	309	44.69	e.59.1.1	133540
2hjnA	236	48.20		
2yrmA	43	50.47		
1brvA	32	50.57	j.33.1.1	46235
1xyiA	66	52.55		
2oy9A	98	55.03		
1d4vA	117	55.98	g.24.1.1,g.24.1.1,g.24.1.1	44915,44916,44917
1rp4A	389	56.03	a.227.1.1	105027
1wilA	89	57.14	g.50.1.3	114676
2ezhA	75	57.76	a.4.1.2	16029
3c8yA	574	58.27		
1cf7B	95	58.61	a.4.5.17	16152
1uw1A	80	58.65	k.42.1.1	100069
2f2lA	167	59.54	d.118.1.1	132843
1x9zA	188	61.22	d.292.1.1	115019
1gpuA	680	62.76	c.36.1.10,c.36.1.6,c.48.1.1	65454,65455,65456
1znfA	25	62.84	g.37.1.1	45036
1anf	370	64.43		
1nhyA	219	64.87	a.45.1.1,c.47.1.5	80520,80521
2g3kA	94	65.66	a.24.28.1	134562
1faoA	126	66.15	b.55.1.1	26974
2elxA	35	66.74		
1v1dA	31	67.57	j.6.1.1	119817
2c2xA	281	67.97		
1ae7A	119	68.19	a.133.1.2	19553
1osdA	72	69.12	d.58.17.1	104022
4mbp	370	71.23		
1e8gA	560	72.82	d.58.32.1,d.145.1.1	39455,41718
1gyxA	76	77.06	d.80.1.1	76387
1njqA	39	77.67	g.37.1.3	85822
1rwjA	82	78.30	a.138.1.1	105114
2pqxA	245	79.99		
2i3sB	36	80.20		
1ykhA	108	80.69	a.252.1.2	123518
1smbA	154	84.80	d.111.1.1	105756
1zejA	293	85.85		
1tiyA	164	86.52	c.97.1.2	107012
1ubkL	534	86.62	e.18.1.1	88422
2j9wA	102	87.03		
2af4C	333	87.52	c.77.1.5	126656
1j55A	95	89.41	a.39.1.2	77078