# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oqcA 125 2.01e-15 a.24.15.1 87264 1jr8A 117 4.42e-15 a.24.15.1 67115 2aj0A 71 1.898 2nytA 190 2.638 1wn5A 130 3.174 c.97.1.1 121082 1cttA 294 3.881 c.97.1.1,c.97.1.1 36022,36023 1wkqA 164 4.477 c.97.1.2 109393 2h8lA 252 6.418 2z3hA 130 7.126 1cc8A 73 7.203 d.58.17.1 39343 1ctt 294 7.269 1z3aA 168 8.309 c.97.1.2 124396 2a8nA 144 9.334 c.97.1.2 126408 2nx8A 179 9.794 1ubkL 534 11.46 e.18.1.1 88422 2b3jA 159 11.74 c.97.1.2 127787 1ovxA 67 11.88 g.39.1.11 93622 2g84A 197 13.47 c.97.1.2 134766 2ds5A 51 14.30 g.39.1.11 131681 1p6oA 161 14.68 c.97.1.2 94185 1c8cA 64 14.93 b.34.13.1 59084 1va6A 518 15.53 d.128.1.4 113598 1r5tA 142 16.67 c.97.1.1 104812 1uwzA 136 17.54 c.97.1.1 108081 2vlgA 111 17.65 1jvrA 137 18.52 a.61.1.2 18132 2eppA 66 18.77 2agaA 190 18.84 1jtkA 136 19.94 c.97.1.1 71862 2jwhA 48 20.20 1a99A 344 21.38 c.94.1.1 35812 2hjnA 236 22.61 2dx8A 67 23.30 2q3pA 112 23.45 d.58.4.4 139798 3b8fA 142 23.57 1azpA 66 23.80 b.34.13.1 37467 1xyiA 66 23.84 2fqhA 109 23.88 2h21A 440 23.98 a.166.1.1,b.85.7.3 135976,135977 2fiyA 309 25.02 e.59.1.1 133540 1dxsA 80 25.19 a.60.1.2 17944 2p09A 78 26.21 2hvwA 184 27.60 1zu1A 127 27.86 1kv4A 42 28.77 j.4.1.3 73051 2q01A 497 31.89 1fe0A 68 32.16 d.58.17.1 39345 2fr5A 146 32.43 c.97.1.1 133965 1uw1A 80 34.91 k.42.1.1 100069 1rlr 761 35.84 1vq2A 193 37.55 c.97.1.2 114004 1rwjA 82 39.09 a.138.1.1 105114 1rp4A 389 39.99 a.227.1.1 105027 1o1xA 155 40.32 c.121.1.1 86553 1brvA 32 41.97 j.33.1.1 46235 1wwrA 171 42.85 c.97.1.2 121366 2ouiA 360 44.20 2pqxA 245 45.57 1e3dB 542 47.38 e.18.1.1 59189 1gpuA 680 47.75 c.36.1.10,c.36.1.6,c.48.1.1 65454,65455,65456 2bijA 305 47.78 1dq3A 454 49.73 b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 2i3sB 36 50.76 1tiyA 164 50.91 c.97.1.2 107012 1j55A 95 51.13 a.39.1.2 77078 1d4vA 117 51.98 g.24.1.1,g.24.1.1,g.24.1.1 44915,44916,44917 2ahmA 88 52.04 a.8.9.1 126760 1ykhA 108 52.36 a.252.1.2 123518 2yrmA 43 54.72 2sasA 185 55.49 a.39.1.5 17258 2j9wA 102 55.77 1h2rL 534 55.83 e.18.1.1 43298 2fccA 137 56.28 a.18.1.1 133264 1mwyA 73 57.02 d.58.17.1 79616 1lu4A 136 59.45 c.47.1.10 91124 1db1A 259 59.78 a.123.1.1 19329 2oy9A 98 61.40 1v1dA 31 61.82 j.6.1.1 119817 2rfbA 343 63.86 2pnkA 428 63.88 2af4C 333 65.51 c.77.1.5 126656 1pot 325 65.89 2iazA 113 65.92 2f2lA 167 67.31 d.118.1.1 132843 1y3jA 77 67.99 1znfA 25 70.13 g.37.1.1 45036 1x3zA 335 70.23 d.3.1.4 121673 1smbA 154 70.42 d.111.1.1 105756 1x9zA 188 74.56 d.292.1.1 115019 1hn6A 110 77.63 g.61.1.1 76721 1faoA 126 78.10 b.55.1.1 26974 2aalA 131 80.34 d.80.1.6 126483 2heuA 401 81.37 1wilA 89 81.43 g.50.1.3 114676 1osdA 72 82.34 d.58.17.1 104022 1uslA 170 82.90 c.121.1.1 99871 1skoA 143 83.66 d.110.7.1 105676 1wuiL 534 86.89 e.18.1.1 121289 1wlzA 105 88.65 a.39.1.7 121024 1tr0A 108 89.27 d.58.4.4 107261