# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oqcA 125 2.19e-14 a.24.15.1 87264 1jr8A 117 4.86e-14 a.24.15.1 67115 2aj0A 71 1.843 1wn5A 130 4.663 c.97.1.1 121082 2nytA 190 5.610 1cttA 294 6.171 c.97.1.1,c.97.1.1 36022,36023 1wkqA 164 6.449 c.97.1.2 109393 1cc8A 73 8.856 d.58.17.1 39343 1ctt 294 10.05 2h8lA 252 13.08 1z3aA 168 14.10 c.97.1.2 124396 1ovxA 67 14.67 g.39.1.11 93622 1c8cA 64 15.08 b.34.13.1 59084 2z3hA 130 15.20 2a8nA 144 15.27 c.97.1.2 126408 2nx8A 179 16.00 2b3jA 159 16.62 c.97.1.2 127787 1va6A 518 17.53 d.128.1.4 113598 2q3pA 112 19.52 d.58.4.4 139798 1azpA 66 20.72 b.34.13.1 37467 2fqhA 109 21.08 2ds5A 51 21.45 g.39.1.11 131681 1xyiA 66 21.47 2eppA 66 21.98 1dxsA 80 23.94 a.60.1.2 17944 2fiyA 309 25.39 e.59.1.1 133540 1rlr 761 25.92 2sasA 185 26.38 a.39.1.5 17258 2agaA 190 26.42 1y3jA 77 27.51 2q01A 497 27.57 2hjnA 236 28.19 1uwzA 136 28.54 c.97.1.1 108081 2vlgA 111 28.75 1zu1A 127 29.09 2h21A 440 30.33 a.166.1.1,b.85.7.3 135976,135977 1j55A 95 30.51 a.39.1.2 77078 1r5tA 142 31.33 c.97.1.1 104812 1fe0A 68 32.05 d.58.17.1 39345 2jwhA 48 32.21 1p6oA 161 32.88 c.97.1.2 94185 1jtkA 136 33.37 c.97.1.1 71862 1a99A 344 36.46 c.94.1.1 35812 1mwyA 73 36.58 d.58.17.1 79616 1rp4A 389 37.03 a.227.1.1 105027 2fr5A 146 38.03 c.97.1.1 133965 2g84A 197 38.95 c.97.1.2 134766 2hvwA 184 40.24 2oy9A 98 41.26 1cf7B 95 41.38 a.4.5.17 16152 3b8fA 142 42.33 1ubkL 534 44.30 e.18.1.1 88422 2p09A 78 45.15 2dx8A 67 45.32 2ahmA 88 46.08 a.8.9.1 126760 1kv4A 42 46.53 j.4.1.3 73051 1ykhA 108 58.36 a.252.1.2 123518 1vq2A 193 59.33 c.97.1.2 114004 2yrmA 43 59.77 2af4C 333 59.86 c.77.1.5 126656 2i3sB 36 60.76 1tiyA 164 61.75 c.97.1.2 107012 1tdpA 111 62.55 a.29.8.1 106781 1d4vA 117 65.41 g.24.1.1,g.24.1.1,g.24.1.1 44915,44916,44917 2b5eA 504 67.38 c.47.1.2,c.47.1.2,c.47.1.2,c.47.1.2 127888,127889,127890,127891 1uw1A 80 67.59 k.42.1.1 100069 1rwjA 82 67.83 a.138.1.1 105114 2pqxA 245 69.02 1jvrA 137 69.46 a.61.1.2 18132 1y0nA 78 69.77 d.291.1.1 116305 2iazA 113 70.18 2bijA 305 74.58 1osdA 72 76.69 d.58.17.1 104022 1smbA 154 78.24 d.111.1.1 105756 2f2lA 167 81.72 d.118.1.1 132843 1gu9A 177 83.13 a.152.1.1 65540 2ebdA 309 84.16 2ia4A 287 85.17 1brvA 32 85.21 j.33.1.1 46235 2ouiA 360 88.62 1wwrA 171 89.22 c.97.1.2 121366