# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1oqcA	125	1.49e-15	a.24.15.1	87264
1jr8A	117	5.88e-15	a.24.15.1	67115
2aj0A	71	4.667		
1wn5A	130	6.875	c.97.1.1	121082
2fqhA	109	8.302		
2h8lA	252	10.55		
1wkqA	164	11.29	c.97.1.2	109393
1r5tA	142	14.30	c.97.1.1	104812
1jtkA	136	15.61	c.97.1.1	71862
1cc8A	73	17.97	d.58.17.1	39343
1uwzA	136	18.26	c.97.1.1	108081
1n28A	124	20.97	a.133.1.2	91550
1vq2A	193	25.27	c.97.1.2	114004
2nytA	190	32.95		
2cdcA	366	34.57		
1tdpA	111	37.01	a.29.8.1	106781
1mwyA	73	37.22	d.58.17.1	79616
2obiA	183	37.85		
2b3jA	159	38.23	c.97.1.2	127787
2cx4A	164	41.34	c.47.1.10	130973
1kvoA	124	42.44	a.133.1.2	19564
1p6oA	161	43.97	c.97.1.2	94185
2fr5A	146	45.08	c.97.1.1	133965
1z5yE	149	48.32	c.47.1.10	124498
1c8cA	64	48.80	b.34.13.1	59084
1le6A	123	49.55	a.133.1.2	73862
1ae7A	119	49.83	a.133.1.2	19553
2p5qA	170	50.95		
2z3hA	130	51.55		
2a8nA	144	51.93	c.97.1.2	126408
1gu9A	177	52.73	a.152.1.1	65540
1i5gA	144	52.85	c.47.1.10	61784
1cttA	294	53.23	c.97.1.1,c.97.1.1	36022,36023
2ia4A	287	54.84		
1f0yA	302	56.16	a.100.1.3,c.2.1.6	18793,30197
1xyiA	66	56.60		
2nmxA	260	57.41	b.74.1.1	138382
1azpA	66	58.02	b.34.13.1	37467
1xvwA	160	62.06	c.47.1.10	122387
1gpjA	404	62.23	a.151.1.1,c.2.1.7,d.58.39.1	65451,65452,65453
2odpA	509	62.71		
2g84A	197	64.11	c.97.1.2	134766
1st9A	143	64.82	c.47.1.10	98987
2hvwA	184	68.21		
1keqA	248	69.34	b.74.1.1	72387
1ldjB	90	69.93	g.44.1.1	73850
2hcyA	347	70.38		
1fe0A	68	74.01	d.58.17.1	39345
1tiyA	164	74.61	c.97.1.2	107012
3b8fA	142	75.44		
1ovnA	248	76.39	a.71.1.1,c.47.1.7	93602,93603
1lw1A	177	77.24	a.152.1.1	74290
1nhyA	219	77.39	a.45.1.1,c.47.1.5	80520,80521
1kb9C	385	77.55	f.32.1.1,f.21.1.2	77315,77316
2jwhA	48	81.37		
1lu4A	136	81.58	c.47.1.10	91124
1ppjC	379	82.89	f.32.1.1,f.21.1.2	104256,104257
2nx8A	179	84.57		
1r9lA	309	85.67	c.94.1.1	97262
2h21A	440	89.04	a.166.1.1,b.85.7.3	135976,135977
1itg	166	89.90