# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1oqcA	125	4.87e-15	a.24.15.1	87264
1jr8A	117	5.76e-14	a.24.15.1	67115
1j09A	468	1.159	a.97.1.1,c.26.1.1	77025,77026
1sqgA	429	1.250	a.79.1.3,c.66.1.38	105912,105913
1tbbA	332	2.556	a.211.1.2	106741
2e7pA	116	2.928		
1y2kA	349	6.520	a.211.1.2	122571
1gln	468	9.212		
1tv9A	335	9.310	a.60.6.1,a.60.12.1,d.218.1.2	112675,112676,112677
1y7qA	98	9.500	a.28.3.2	122714
2a6cA	83	9.791	a.35.1.13	126236
2zihA	347	10.42		
1kaeA	434	13.61	c.82.1.2	72247
2bl0B	145	15.19		
1so2A	420	15.84	a.211.1.2	98936
1lm5A	214	16.89	d.211.2.1	74029
2riqA	160	19.35		
1f0jA	377	20.32	a.211.1.2	19346
2h5nA	133	20.33		
1rnfA	120	20.53	d.5.1.1	37291
2c78A	405	21.96	b.43.3.1,b.44.1.1,c.37.1.8	130037,130038,130039
2nu8B	388	22.10		
1p5zB	263	22.21	c.37.1.1	87815
2a19B	284	25.00		
3bjoA	103	27.11		
2jacA	110	27.73		
2dklA	85	28.35	a.5.2.1	131555
2od5A	116	28.36		
2fp4B	395	29.43	c.23.4.1,d.142.1.4	133897,133898
2b43A	526	31.37		
1oe0A	230	33.44	c.37.1.1	92788
1ejxA	100	34.18	d.8.1.1	83182
2exrA	524	34.60		
1vraB	215	34.78		
2ht9A	146	35.28		
1ybeA	449	36.72	c.1.17.2,d.41.2.2	116605,116606
1midA	91	36.94	a.52.1.1	91280
1j7xA	302	40.38	c.14.1.2	66425
1mzm	93	42.05		
1tbfA	347	42.71	a.211.1.2	106743
2rkpA	335	43.39		
1zvdA	380	44.32		
2scpA	174	44.44	a.39.1.5	17256
1fk5A	93	44.59	a.52.1.1	59866
1zklA	353	45.66		
1qksA	567	45.92	a.3.1.2,b.70.2.1	15951,27710
2pocA	367	46.16		
1su0B	159	46.38	d.224.1.2	106015
2ousA	331	48.74		
2q22A	139	49.10		
2hzfA	114	49.75		
1noxA	205	50.95	d.90.1.1	40242
2rjiA	84	51.01		
2eb0A	307	53.00		
2ie4A	589	53.96	a.118.1.2	137291
2o38A	120	55.42		
1zm7A	230	55.53		
1rzlA	91	56.20	a.52.1.1	17817
2o0jA	385	56.73		
2pvbA	107	56.90	a.39.1.4	17205
2flsA	132	57.23		
1om1A	332	57.67	d.144.1.7	93347
2c3zA	222	58.31		
2olmA	140	60.23		
3bm1A	183	60.58		
2jgqA	233	62.34		
1tadA	324	64.39	a.66.1.1,c.37.1.8	18194,32077
1b3uA	588	64.41	a.118.1.2	19135
2oqoA	200	65.09		
4ubpA	101	65.62	d.8.1.1	37352
1rztA	331	66.44	a.60.6.1,a.60.12.1,d.218.1.2	98224,98225,98226
1ttzA	87	67.19	c.47.1.1	107309
2erbA	125	68.05		
2pw4A	188	68.50		
2qacA	146	69.12		
2dfwA	396	70.37		
1iioA	84	72.14	a.39.4.1	66150
1cc8A	73	72.39	d.58.17.1	39343
3b57A	209	73.79		
1mumA	295	73.83	c.1.12.7	85108
2oe3A	114	74.98		
2ih3C	122	76.40		
1r3jC	124	77.37	f.14.1.1	96932
2dvzA	314	78.11		
2grmA	317	78.36		
1t6nA	220	80.27	c.37.1.19	106576
1ymiA	334	80.54		
1d3yA	301	81.08	e.12.1.1	43252
2f6sA	201	81.58	a.265.1.1	133058
1kk8B	139	82.78	a.39.1.5	77430
1zh5A	195	84.54	a.4.5.46,d.58.7.1	125073,125074
1vzwA	244	84.61	c.1.2.1	120553
2bsnA	145	85.21		
1jbeA	128	85.35	c.23.1.1	62845
2dkjA	407	85.84		
1zy4A	303	85.94		
1wtyA	119	86.03	a.24.16.2	114880
2qk2A	242	88.48		
1xccA	220	88.57	c.47.1.10	115113
1wdcB	156	88.66	a.39.1.5	17302
2o5gA	148	89.11		
1nox	205	89.91