# List of template models which gave the target the best scores. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Template_ID Template_Length Template_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1oqcA 113 4.025e-18 a.24.15.1 87264 1jr8A 106 6.440e-18 a.24.15.1 67115 2ajjA 29 3.650e+00 2qk1A 248 3.799e+00 2axtT 31 4.241e+00 2qeeA 416 4.296e+00 3bgeA 164 4.740e+00 1zoqC 48 5.765e+00 a.153.1.1 125453 1kbhB 60 7.532e+00 a.153.1.1 68383 2hh6A 113 7.928e+00 1d4aA 274 7.968e+00 1d4aA c.23.5.3 31219 2nytA 186 9.017e+00 1qrdA 274 9.671e+00 1d4aA c.23.5.3 31217 1n0zA 46 1.034e+01 g.41.11.1 85247 1lpvA 53 1.038e+01 g.62.1.1 78124 1qbgA 273 1.306e+01 1d4aA c.23.5.3 31227 1cc8A 73 1.365e+01 1cc8A d.58.17.1 39343 2r9gA 181 1.365e+01 2eqxA 106 1.801e+01 2qk2A 242 1.930e+01 1vljA 399 1.943e+01 e.22.1.2 108832 1tu9A 132 1.985e+01 a.1.1.2 107320 1dbrA 228 2.030e+01 1qk3A c.61.1.1 34041 2ac0A 199 2.228e+01 b.2.5.2 126539 2p41A 260 2.259e+01 2govA 185 2.262e+01 d.60.1.4 135447 1ajyA 72 2.344e+01 1zmeC g.38.1.1 45083 h.1.3.1 45516 1bh0A 30 2.446e+01 j.6.1.1 46102 1e2xA 223 2.684e+01 1e2xA a.4.5.6 16113 a.78.1.1 18443 1hw1A 227 2.755e+01 1e2xA a.4.5.6 16111 a.78.1.1 18441 1fsgA 234 3.096e+01 1qk3A c.61.1.1 34029 2bc3A 146 3.134e+01 b.61.1.1 128279 1zmeC 71 3.185e+01 1zmeC g.38.1.1 45081 h.1.3.1 45514 1oj7A 391 3.273e+01 e.22.1.2 103971 2yrtA 76 3.525e+01 1fe0A 67 3.555e+01 1cc8A d.58.17.1 39345 1uh4A 638 3.661e+01 b.1.18.2 99391 b.71.1.1 99392 c.1.8.1 99393 2f9iB 261 3.662e+01 1gybA 123 3.736e+01 d.17.4.2 70744 1zx2A 131 3.868e+01 2ioiA 188 3.893e+01