# List of top-scoring protein chains for t2k.100-30-str hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1oqcA 125 6.46e-23 a.24.15.1 87264 1jr8A 117 5.11e-21 a.24.15.1 67115 1mlwA 301 3.87e-01 d.178.1.1 79289 2au5A 139 6.57e-01 a.244.1.1 127322 2hd5A 359 8.58e-01 1ku1A 230 1.02e+00 a.118.3.1 72996 2qdeA 397 1.36e+00 2qyuA 627 1.94e+00 1p8cA 145 2.15e+00 a.152.1.2 94354 1aj9A 141 2.39e+00 1abwA a.1.1.2 15332 3beyA 96 2.48e+00 2d5xA 141 2.49e+00 a.1.1.2 131282 1dgjA 907 2.50e+00 1alo a.56.1.1 17909 d.15.4.2 37694 d.41.1.1 38585 d.133.1.1 41415 1itg 166 2.96e+00 1b9dA 2qzaA 618 2.98e+00 1hyvA 166 3.00e+00 1b9dA c.55.3.2 61424 1wj7A 104 3.18e+00 a.5.2.1 120976 1j7yA 141 3.20e+00 a.1.1.2 66426 1vkeA 133 3.24e+00 a.152.1.2 108650 1cc8A 73 3.39e+00 1cc8A d.58.17.1 39343 1bl3A 160 3.45e+00 1b9dA c.55.3.2 33655 1abwA 283 3.47e+00 1abwA a.1.1.2 15288 a.1.1.2 15289 1a3oA 141 3.63e+00 1abwA a.1.1.2 15274 1babA 143 3.63e+00 1abwA a.1.1.2 15235 1irdA 141 3.63e+00 a.1.1.2 66286 1b9dA 163 4.05e+00 1b9dA c.55.3.2 33649 1dszA 86 4.34e+00 2nllB g.39.1.2 45129 2ouwA 138 4.44e+00 2odvA 235 4.50e+00 1u2xA 474 4.53e+00 c.72.1.3 107622 1exqA 154 4.70e+00 1b9dA c.55.3.2 33646 1lqyA 184 4.70e+00 d.167.1.1 74212 2nytA 190 4.75e+00 1xl3C 92 5.24e+00 a.243.1.1 122104 1f4tA 368 5.33e+00 1f4tA a.104.1.1 18973 2aj0A 71 5.46e+00 2oyoA 196 6.17e+00 2ac3A 316 6.33e+00 1ltzA 297 6.49e+00 d.178.1.1 74254 2o5gA 148 7.00e+00 1jwwA 80 7.57e+00 d.58.17.1 71919 1b1jA 123 7.93e+00 7rsa d.5.1.1 37298 2be3A 226 7.96e+00 d.218.1.8 128349 2dnxA 130 8.25e+00 2v1fA 153 8.66e+00 a.1.1.2 140055 1mhqA 148 9.09e+00 a.118.9.2 84973 1y1xA 191 9.19e+00 a.39.1.8 116374 1v4xA 144 9.56e+00 a.1.1.2 108363 3bomA 142 9.73e+00 1by4A 82 9.75e+00 2nllB g.39.1.2 45110 2oy9A 98 9.87e+00 1si7A 369 1.01e+01 d.265.1.4 98883 2p09A 78 1.04e+01 2pv2A 103 1.09e+01 2iq1A 274 1.09e+01 1b1eA 123 1.12e+01 7rsa d.5.1.1 37300 1a32 88 1.13e+01 1a32 1a32A 88 1.13e+01 a.16.1.2 16384 1z8uA 102 1.19e+01 a.7.11.1 124724 1a6m 151 1.28e+01 1a6m 1a6mA 151 1.28e+01 a.1.1.2 15018 1lw1A 177 1.29e+01 a.152.1.1 74290 1je8A 82 1.32e+01 a.4.6.2 77108 1qm9A 198 1.34e+01 1qm9A d.58.7.1 39207 d.58.7.1 39208 1fe0A 68 1.40e+01 1cc8A d.58.17.1 39345 2rkpA 335 1.49e+01 1qsdA 106 1.52e+01 1qsdA a.7.5.1 16335 1ylmA 144 1.53e+01 1b3sD 90 1.53e+01 1ay7B c.9.1.1 30846 1ifqA 138 1.55e+01 1ifqA d.110.4.1 62350 2p3yA 491 1.60e+01 1u2pA 163 1.65e+01 1jvrA 137 1.69e+01 a.61.1.2 18132 1agiA 125 1.70e+01 d.5.1.1 37303 1aw0 72 1.77e+01 1aw0 1cfr 285 1.81e+01 1cfr 1cfrA 285 1.81e+01 c.52.1.7 33312 1hdsA 141 1.83e+01 1abwA a.1.1.2 15378 2nutC 196 1.88e+01 3c5vA 316 1.91e+01 1wmuB 146 1.94e+01 a.1.1.2 109417 1ya0A 497 1.98e+01 a.118.8.1 122785 1wwpA 119 1.99e+01 2riqA 160 2.01e+01 1xszA 356 2.03e+01 a.118.3.1 116005 d.129.9.1 116006 1k59A 123 2.04e+01 d.5.1.1 72073 1eexG 173 2.07e+01 1dioG a.23.2.1 16490 1h2aL 567 2.13e+01 1h2rL e.18.1.1 43299 2c78A 405 2.14e+01 b.43.3.1 130037 b.44.1.1 130038 c.37.1.8 130039 2g3kA 94 2.14e+01 a.24.28.1 134562 2z3hA 130 2.15e+01 1b1iA 123 2.17e+01 7rsa d.5.1.1 37295 1wr6A 111 2.18e+01 1a19A 90 2.24e+01 1ay7B c.9.1.1 30831 2af6A 258 2.25e+01 1hzfA 367 2.26e+01 a.102.4.4 76731 2nllA 66 2.27e+01 2nllB g.39.1.2 45109 1zoqC 47 2.33e+01 a.153.1.1 125453 2ex5A 207 2.40e+01 1e4eA 343 2.41e+01 1iow c.30.1.2 59221 d.142.1.1 59222 2i88A 191 2.41e+01 1f0lA 535 2.42e+01 1ddt b.2.1.1 22377 d.166.1.1 42239 f.1.2.1 43382 2jvpA 73 2.42e+01 1un3A 123 2.43e+01 d.5.1.1 99646 1xlyA 234 2.44e+01 a.232.1.1 115457 2i8dA 123 2.48e+01 1aba 87 2.48e+01 1aba 1abaA 87 2.48e+01 c.47.1.1 32760 1ssqA 267 2.51e+01 b.81.1.6 105993 1exmA 405 2.54e+01 1efcA b.43.3.1 25696 b.44.1.1 25736 c.37.1.8 32131 1ymiA 334 2.55e+01 2adcA 229 2.58e+01 d.58.7.1 126582 d.58.7.1 126583 1gu9A 177 2.59e+01 a.152.1.1 65540 2j9uA 96 2.59e+01 a.24.28.1 138155 1iapA 211 2.61e+01 a.91.1.1 62119 1wn5A 130 2.65e+01 c.97.1.1 121082 2abk 211 2.66e+01 2abk 2abkA 211 2.66e+01 a.96.1.1 18743 2brxA 244 2.73e+01 c.73.1.3 129028 1l0oA 150 2.75e+01 d.122.1.3 73403 2gukA 120 2.75e+01 1th8A 145 2.78e+01 d.122.1.3 106908 1ft1A 377 2.79e+01 1ft1A a.118.6.1 19186 1aipA 405 2.79e+01 1efcA b.43.3.1 25697 b.44.1.1 25737 c.37.1.8 32132 2gcfA 73 2.83e+01 2prrA 197 2.85e+01 2o2kA 355 2.86e+01 1a4fA 141 2.87e+01 1abwA a.1.1.2 15394 2i7vA 459 2.87e+01 1st9A 143 2.89e+01 c.47.1.10 98987 2cmzA 423 2.89e+01 2qg7A 458 2.98e+01 1ay7B 89 2.99e+01 1ay7B c.9.1.1 30836 1l2iA 261 3.06e+01 a.123.1.1 73503 1brvA 32 3.07e+01 j.33.1.1 46235 1v4xB 146 3.16e+01 a.1.1.2 108364 3clmA 352 3.18e+01 2f9sA 151 3.19e+01 c.47.1.10 133168 1xk4C 113 3.21e+01 a.39.1.2 122057 2bh4X 134 3.22e+01 1kkhA 317 3.23e+01 d.14.1.5 72645 d.58.26.3 72646 1z2zA 446 3.28e+01 2ot3A 274 3.28e+01 a.222.1.1 139311 1aueA 100 3.28e+01 1nsgB a.24.7.1 16615 1vctA 205 3.30e+01 a.7.12.1 119986 d.286.1.1 119987 2b5tI 432 3.33e+01 e.1.1.1 127905 1mwyA 73 3.36e+01 d.58.17.1 79616 1vljA 407 3.37e+01 e.22.1.2 108832 3by4A 212 3.41e+01 1dszB 85 3.44e+01 2nllB g.39.1.2 45108 2nllB 103 3.46e+01 2nllB g.39.1.2 45115 1euvA 221 3.47e+01 1euvA d.3.1.7 37133 1jw2A 72 3.47e+01 a.23.5.1 67372 1tbfA 347 3.47e+01 a.211.1.2 106743 1gotG 73 3.52e+01 1tbgE a.137.3.1 19629 1tbgE 68 3.54e+01 1tbgE a.137.3.1 19630 1o5oA 221 3.54e+01 c.61.1.1 92509 2q14A 410 3.59e+01 1eyvA 156 3.65e+01 1eyvA a.79.1.1 18446 1r2fA 319 3.66e+01 1r2fA a.25.1.2 16800 3b7nA 320 3.69e+01 1w0bA 102 3.71e+01 a.7.11.1 108985 1x6iA 91 3.72e+01 1a0rG 65 3.76e+01 1tbgE a.137.3.1 19639 1v9jA 113 3.77e+01 d.52.6.1 100542 1rkpA 326 3.79e+01 a.211.1.2 97620 1d8dA 377 3.80e+01 1ft1A a.118.6.1 19185 1fapB 95 3.81e+01 1nsgB a.24.7.1 16618 1dgmA 363 3.87e+01 1bx4A c.72.1.1 34936 1ivhA 394 3.92e+01 3mdeA a.29.3.1 16608 e.6.1.1 42869 1jcrA 377 3.94e+01 a.118.6.1 66506 2h8fA 143 3.94e+01 a.1.1.2 136239 2br9A 234 3.98e+01 1gt91 357 4.00e+01