Best Alignments for T0396

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1oqcA	1.1081e-18	1oqcA/T0396-1oqcA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.24.15.1
1jr8A	1.2664e-18	1jr8A/T0396-1jr8A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.24.15.1
2nytA	9.2572e-01	2nytA/T0396-2nytA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1r5tA	3.6184e+00	1r5tA/T0396-1r5tA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.1
3b8fA	3.7720e+00	3b8fA/T0396-3b8fA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2aj0A	4.0700e+00	2aj0A/T0396-2aj0A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1wn5A	4.8479e+00	1wn5A/T0396-1wn5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.1
2z3hA	5.2682e+00	2z3hA/T0396-2z3hA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2dx8A	6.5202e+00	2dx8A/T0396-2dx8A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1jtkA	7.7949e+00	1jtkA/T0396-1jtkA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.1
1uwzA	7.9885e+00	1uwzA/T0396-1uwzA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.1
2fqhA	8.7503e+00	2fqhA/T0396-2fqhA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2eppA	9.8362e+00	2eppA/T0396-2eppA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1ovxA	9.8986e+00	1ovxA/T0396-1ovxA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.39.1.11
1p6oA	1.0438e+01	1p6oA/T0396-1p6oA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.2
2q3pA	1.0780e+01	2q3pA/T0396-2q3pA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.58.4.4
1cc8A	1.0919e+01	1cc8A/T0396-1cc8A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.58.17.1
1uaqA	1.1585e+01	1uaqA/T0396-1uaqA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.2
1jvrA	1.2348e+01	1jvrA/T0396-1jvrA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.61.1.2
1jwwA	1.3466e+01	1jwwA/T0396-1jwwA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.58.17.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001