# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oqcA 125 2.03e-15 a.24.15.1 87264 1jr8A 117 3.77e-15 a.24.15.1 67115 2nytA 190 0.8544 2aj0A 71 1.498 2q3pA 112 1.549 d.58.4.4 139798 1jvrA 137 1.613 a.61.1.2 18132 1aqdA 192 2.038 b.1.1.2,d.19.1.1 21585,38159 2dx8A 67 3.027 1ieaA 192 3.052 b.1.1.2,d.19.1.1 21631,38205 3cjdA 198 4.246 2fqhA 109 5.715 1jtkA 136 6.341 c.97.1.1 71862 1g7eA 122 6.353 c.47.1.7 33055 1r5tA 142 6.371 c.97.1.1 104812 2ahmA 88 6.897 a.8.9.1 126760 1j55A 95 7.126 a.39.1.2 77078 1uwzA 136 7.305 c.97.1.1 108081 1cc8A 73 7.521 d.58.17.1 39343 1p8cA 145 7.581 a.152.1.2 94354 1jwwA 80 7.646 d.58.17.1 71919 2p09A 78 7.999 1ovxA 67 8.260 g.39.1.11 93622 1rp4A 389 8.601 a.227.1.1 105027 1wn5A 130 8.746 c.97.1.1 121082 2eppA 66 9.242 1ctt 294 9.613 1fngA 192 9.726 b.1.1.2,d.19.1.1 59904,59905 1cpzA 68 9.857 d.58.17.1 39351 2qycA 103 11.12 2dktA 143 11.52 2z3hA 130 11.61 3beyA 96 12.48 1tr0A 108 13.41 d.58.4.4 107261 2fr5A 146 13.45 c.97.1.1 133965 3b8fA 142 14.37 1lw1A 177 14.72 a.152.1.1 74290 2ds5A 51 14.92 g.39.1.11 131681 2b3jA 159 16.47 c.97.1.2 127787 1gcwB 135 17.31 a.1.1.2 15591 1mwyA 73 19.13 d.58.17.1 79616 2oy9A 98 19.29 1cttA 294 19.65 c.97.1.1,c.97.1.1 36022,36023 1ydxA 406 19.80 d.287.1.2,d.287.1.2 123004,123005 1uw1A 80 19.84 k.42.1.1 100069 2o4dA 165 20.04 a.152.1.3 138907 1gcvB 136 20.69 a.1.1.2 15589 1uaqA 158 21.31 c.97.1.2 88386 1va6A 518 22.28 d.128.1.4 113598 1p6oA 161 23.04 c.97.1.2 94185 1oywA 523 24.15 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1osdA 72 25.46 d.58.17.1 104022 1a6aA 176 26.02 b.1.1.2,d.19.1.1 21615,38189 1wwrA 171 26.09 c.97.1.2 121366 2elxA 35 26.54 2j9wA 102 26.57 2q01A 497 26.79 2hvwA 184 27.14 1lqsL 157 27.44 a.26.1.3 74192 2cycA 375 29.72 1a4fA 141 30.05 a.1.1.2 15394 1tyhA 248 30.22 a.132.1.3 107458 1gxqA 106 30.39 a.4.6.1 70721 2g3kA 94 30.40 a.24.28.1 134562 1zgwA 139 31.07 2eqoA 140 31.58 1euvA 221 31.87 d.3.1.7 37133 1brvA 32 31.97 j.33.1.1 46235 2gykB 134 33.09 d.4.1.1 135857 2b7oA 464 33.65 c.1.10.8 128047 2nx8A 179 33.67 2gmyA 153 33.83 a.152.1.3 135398 2h8fB 146 34.90 a.1.1.2 136240 1ret 43 37.06 2gb4A 252 37.18 2q0tA 263 37.79 1ldjB 90 38.07 g.44.1.1 73850 3ccgA 190 39.46 1qnxA 209 39.47 d.111.1.1 40914 1uddA 226 39.68 a.132.1.3 107776 1wpxB 220 40.06 1qupA 222 40.69 b.1.8.1,d.58.17.1 22301,39352 1v4xB 146 42.48 a.1.1.2 108364 1smbA 154 43.16 d.111.1.1 105756 1vkeA 133 43.92 a.152.1.2 108650 1b0aA 288 44.23 c.2.1.7,c.58.1.2 30286,33934 1u8bA 133 45.30 2d8qA 70 47.47 g.85.1.1 131335 1gu9A 177 47.94 a.152.1.1 65540 1cg5B 141 48.27 a.1.1.2 15585 2czrA 226 48.96 1js8A 394 49.64 a.86.1.1,b.112.1.1 67219,67220 2oyoA 196 50.12 2eloA 37 53.59 1bbxC 63 53.97 b.34.13.1 37465 2j9uA 96 55.56 a.24.28.1 138155 1h2aL 567 55.85 e.18.1.1 43299 1j7yA 141 55.92 a.1.1.2 66426 1c8cA 64 56.21 b.34.13.1 59084 1odoA 408 59.70 a.104.1.1 92783 1yjrA 75 60.25 2fipA 115 60.85 1zoqC 47 60.89 a.153.1.1 125453 1vq2A 193 61.38 c.97.1.2 114004 1s1hN 36 61.61 i.1.1.1 105166 1v1dA 31 61.96 j.6.1.1 119817 1wkqA 164 62.18 c.97.1.2 109393 2hdpA 63 62.19 2ajjA 28 62.22 1guuA 52 63.93 a.4.1.3 83332 1u84A 90 64.00 a.230.1.1 113114 1bf4A 63 64.64 b.34.13.1 37461 1bnzA 64 65.22 b.34.13.1 37468 1xyiA 66 65.38 2a8nA 144 66.18 c.97.1.2 126408 1b08A 158 67.63 d.169.1.1,h.1.1.1 42416,45423 1uh6A 100 68.92 d.15.1.1 99394 1tiyA 164 69.31 c.97.1.2 107012 1wywA 230 69.96 1i4fA 275 70.11 b.1.1.2,d.19.1.1 61687,61688 1azpA 66 71.34 b.34.13.1 37467 1hocA 272 72.83 b.1.1.2,d.19.1.1 20815,38297 1ykhA 108 72.88 a.252.1.2 123518 2gcfA 73 75.22 1a3oA 141 78.67 a.1.1.2 15274 2av1A 275 78.79 b.1.1.2,d.19.1.1 127349,127350 1t2bA 397 79.31 1acf 125 81.49 1aw0 72 82.39 3bomA 142 82.73 2d5xA 141 84.01 a.1.1.2 131282 1fe0A 68 84.46 d.58.17.1 39345 2scuB 388 85.11 c.23.4.1,d.142.1.4 31141,41562 2oq2A 261 86.30 1cptA 428 86.59 a.104.1.1 18968 2a2mA 258 87.07 a.132.1.3 126039 1fxxA 482 87.30 c.55.3.5 33726 2uvjA 408 87.49 1r89A 437 87.77 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 1ttzA 87 87.95 c.47.1.1 107309 2p5qA 170 88.03 2d58A 107 88.38 2bf9A 36 88.94 j.6.1.1 116717 1behA 187 89.52 b.17.1.1 23700 2q4xA 221 89.77 a.132.1.3 139880