# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oqcA 125 1.98e-16 a.24.15.1 87264 1jr8A 117 3.33e-16 a.24.15.1 67115 1jvrA 137 0.5045 a.61.1.2 18132 2nytA 190 1.115 1aqdA 192 1.372 b.1.1.2,d.19.1.1 21585,38159 1ieaA 192 1.704 b.1.1.2,d.19.1.1 21631,38205 2q3pA 112 2.571 d.58.4.4 139798 2aj0A 71 2.643 2dx8A 67 2.931 1j55A 95 5.659 a.39.1.2 77078 3cjdA 198 5.772 1r5tA 142 6.283 c.97.1.1 104812 1jtkA 136 6.521 c.97.1.1 71862 1jwwA 80 6.565 d.58.17.1 71919 1fngA 192 7.225 b.1.1.2,d.19.1.1 59904,59905 1uwzA 136 7.559 c.97.1.1 108081 1cc8A 73 7.922 d.58.17.1 39343 1wn5A 130 8.151 c.97.1.1 121082 1ovxA 67 8.180 g.39.1.11 93622 1p8cA 145 8.344 a.152.1.2 94354 2ahmA 88 9.612 a.8.9.1 126760 1ctt 294 10.28 1g7eA 122 10.81 c.47.1.7 33055 2fr5A 146 11.15 c.97.1.1 133965 1cpzA 68 11.72 d.58.17.1 39351 3b8fA 142 11.72 1va6A 518 12.41 d.128.1.4 113598 1ydxA 406 12.70 d.287.1.2,d.287.1.2 123004,123005 2dktA 143 12.77 2p09A 78 13.56 2z3hA 130 13.87 2b3jA 159 14.25 c.97.1.2 127787 2ds5A 51 15.33 g.39.1.11 131681 1brvA 32 16.58 j.33.1.1 46235 1rp4A 389 16.72 a.227.1.1 105027 1lw1A 177 16.76 a.152.1.1 74290 3beyA 96 16.83 1mwyA 73 16.96 d.58.17.1 79616 1a6aA 176 17.15 b.1.1.2,d.19.1.1 21615,38189 1wwrA 171 18.06 c.97.1.2 121366 2eppA 66 18.86 2qycA 103 18.87 2d8qA 70 19.26 g.85.1.1 131335 1cttA 294 22.80 c.97.1.1,c.97.1.1 36022,36023 1uaqA 158 23.28 c.97.1.2 88386 1p6oA 161 23.90 c.97.1.2 94185 1a4fA 141 25.10 a.1.1.2 15394 1hocA 272 25.11 b.1.1.2,d.19.1.1 20815,38297 2b7oA 464 25.95 c.1.10.8 128047 2cycA 375 26.76 1oywA 523 27.40 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1tr0A 108 27.66 d.58.4.4 107261 1gcwB 135 27.70 a.1.1.2 15591 2hvwA 184 27.95 2oy9A 98 28.15 1tyhA 248 28.47 a.132.1.3 107458 2fqhA 109 29.48 1gcvB 136 29.55 a.1.1.2 15589 1gxqA 106 29.71 a.4.6.1 70721 2j9wA 102 29.93 1c8cA 64 30.04 b.34.13.1 59084 2o4dA 165 30.18 a.152.1.3 138907 3bw8A 217 30.65 1osdA 72 30.94 d.58.17.1 104022 2gykB 134 32.58 d.4.1.1 135857 2g3kA 94 33.56 a.24.28.1 134562 1uddA 226 35.36 a.132.1.3 107776 2ajjA 28 35.54 1uw1A 80 36.87 k.42.1.1 100069 1bf4A 63 37.37 b.34.13.1 37461 1euvA 221 38.64 d.3.1.7 37133 2nx8A 179 38.89 1bnzA 64 39.23 b.34.13.1 37468 1wpxB 220 39.97 1j7yA 141 40.19 a.1.1.2 66426 1xyiA 66 40.19 1azpA 66 41.43 b.34.13.1 37467 1h2aL 567 41.80 e.18.1.1 43299 1ret 43 43.70 1bbxC 63 44.64 b.34.13.1 37465 1vq2A 193 46.41 c.97.1.2 114004 1uh6A 100 47.22 d.15.1.1 99394 1hdsA 141 47.77 a.1.1.2 15378 1lqsL 157 48.98 a.26.1.3 74192 2eqoA 140 49.12 1smbA 154 49.80 d.111.1.1 105756 2q01A 497 49.81 1qupA 222 50.01 b.1.8.1,d.58.17.1 22301,39352 1qnxA 209 51.14 d.111.1.1 40914 1ykhA 108 51.87 a.252.1.2 123518 2uvjA 408 52.72 1f7tA 122 52.95 d.150.1.2 59667 1wywA 230 54.03 3bomA 142 54.20 2gmyA 153 54.24 a.152.1.3 135398 2h8fB 146 54.98 a.1.1.2 136240 1vkeA 133 55.78 a.152.1.2 108650 1u84A 90 56.03 a.230.1.1 113114 1b08A 158 57.24 d.169.1.1,h.1.1.1 42416,45423 2q0tA 263 58.44 2oq2A 261 58.85 1b0aA 288 60.37 c.2.1.7,c.58.1.2 30286,33934 1guuA 52 61.61 a.4.1.3 83332 1zoqC 47 62.74 a.153.1.1 125453 2h8fA 143 63.54 a.1.1.2 136239 2fipA 115 64.99 1yjrA 75 65.28 1v4xB 146 67.05 a.1.1.2 108364 1bde 35 67.55 1cg5B 141 68.12 a.1.1.2 15585 2a8nA 144 68.42 c.97.1.2 126408 2j9uA 96 74.67 a.24.28.1 138155 2hhlA 195 75.32 1t2bA 397 76.14 2d3yA 219 76.99 2q4xA 221 77.10 a.132.1.3 139880 2ogiA 196 77.73 1u8bA 133 78.10 1cptA 428 79.47 a.104.1.1 18968 1acf 125 79.57 1pl8A 356 81.39 b.35.1.2,c.2.1.1 94878,94879 1tiyA 164 82.18 c.97.1.2 107012 1yzbA 182 83.95 1v4xA 144 84.54 a.1.1.2 108363 2d5xA 141 85.67 a.1.1.2 131282 2qg8A 163 86.00 1zgwA 139 87.19 2iqyA 190 88.08 2hdpA 63 88.09 1v1dA 31 88.91 j.6.1.1 119817 1yakA 263 89.79 a.132.1.3 122833