# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oqcA 125 1.38e-18 a.24.15.1 87264 1jr8A 117 2.85e-18 a.24.15.1 67115 2nytA 190 0.3618 1jvrA 137 0.4294 a.61.1.2 18132 2dx8A 67 0.7689 2aj0A 71 0.9571 1aqdA 192 0.9650 b.1.1.2,d.19.1.1 21585,38159 1va6A 518 1.163 d.128.1.4 113598 1ieaA 192 1.209 b.1.1.2,d.19.1.1 21631,38205 1ovxA 67 1.242 g.39.1.11 93622 2q3pA 112 1.368 d.58.4.4 139798 1jwwA 80 1.511 d.58.17.1 71919 1wn5A 130 1.589 c.97.1.1 121082 1r5tA 142 1.668 c.97.1.1 104812 3cjdA 198 1.739 2ds5A 51 2.420 g.39.1.11 131681 1cc8A 73 2.632 d.58.17.1 39343 2z3hA 130 2.943 1jtkA 136 3.172 c.97.1.1 71862 2eqoA 140 3.312 1uwzA 136 3.388 c.97.1.1 108081 2p09A 78 3.516 2eppA 66 4.093 2fr5A 146 5.288 c.97.1.1 133965 2o4dA 165 5.469 a.152.1.3 138907 1ctt 294 5.580 3b8fA 142 5.921 2gmyA 153 6.144 a.152.1.3 135398 1wwrA 171 6.194 c.97.1.2 121366 1fngA 192 6.212 b.1.1.2,d.19.1.1 59904,59905 2dktA 143 6.664 1ydxA 406 6.787 d.287.1.2,d.287.1.2 123004,123005 2b3jA 159 7.102 c.97.1.2 127787 1cttA 294 7.235 c.97.1.1,c.97.1.1 36022,36023 1c8cA 64 7.677 b.34.13.1 59084 1g7eA 122 7.880 c.47.1.7 33055 1ret 43 7.955 1uw1A 80 8.204 k.42.1.1 100069 1zgwA 139 8.615 1p8cA 145 8.831 a.152.1.2 94354 2ahmA 88 9.021 a.8.9.1 126760 2oy9A 98 9.124 1p6oA 161 10.06 c.97.1.2 94185 1uaqA 158 10.26 c.97.1.2 88386 1rp4A 389 10.34 a.227.1.1 105027 1gxqA 106 11.03 a.4.6.1 70721 1gcvB 136 11.18 a.1.1.2 15589 2qycA 103 11.39 1wpxB 220 11.56 1bf4A 63 11.70 b.34.13.1 37461 1bnzA 64 12.01 b.34.13.1 37468 1gcwB 135 12.32 a.1.1.2 15591 1lw1A 177 12.58 a.152.1.1 74290 1vq2A 193 13.27 c.97.1.2 114004 1osdA 72 13.49 d.58.17.1 104022 2b7oA 464 14.00 c.1.10.8 128047 1azpA 66 14.02 b.34.13.1 37467 1smbA 154 14.39 d.111.1.1 105756 1j55A 95 14.39 a.39.1.2 77078 1cpzA 68 14.93 d.58.17.1 39351 1a4fA 141 14.97 a.1.1.2 15394 3beyA 96 15.40 1qnrA 344 15.49 c.1.8.3 28834 1uh6A 100 15.54 d.15.1.1 99394 2gb4A 252 15.99 1tr0A 108 16.56 d.58.4.4 107261 2hvwA 184 16.72 1xyiA 66 16.95 2nx8A 179 17.28 2i10A 202 17.46 a.4.1.9,a.121.1.1 136960,136961 1u8bA 133 19.22 2oyoA 196 19.66 2fqhA 109 20.30 1euvA 221 20.41 d.3.1.7 37133 1bbxC 63 20.45 b.34.13.1 37465 1a6aA 176 20.60 b.1.1.2,d.19.1.1 21615,38189 2g3kA 94 21.15 a.24.28.1 134562 1hocA 272 21.87 b.1.1.2,d.19.1.1 20815,38297 1qupA 222 22.22 b.1.8.1,d.58.17.1 22301,39352 2gykB 134 22.29 d.4.1.1 135857 1yjrA 75 22.30 2h8fB 146 23.91 a.1.1.2 136240 1e2kA 331 24.21 c.37.1.1 31854 2a8nA 144 25.58 c.97.1.2 126408 1v4xB 146 25.63 a.1.1.2 108364 1yzbA 182 26.73 1wkqA 164 27.66 c.97.1.2 109393 2czrA 226 29.02 2g84A 197 29.30 c.97.1.2 134766 2q01A 497 29.49 1tiyA 164 29.95 c.97.1.2 107012 1f7tA 122 31.39 d.150.1.2 59667 1u84A 90 32.06 a.230.1.1 113114 1brvA 32 32.38 j.33.1.1 46235 2ctuA 73 32.44 2d8qA 70 32.65 g.85.1.1 131335 1v1dA 31 32.69 j.6.1.1 119817 2d3yA 219 33.59 2p5qA 170 34.00 1fe0A 68 34.67 d.58.17.1 39345 1j7yA 141 34.81 a.1.1.2 66426 2j9wA 102 36.08 1zoqC 47 36.21 a.153.1.1 125453 1mwyA 73 36.65 d.58.17.1 79616 1qnxA 209 37.35 d.111.1.1 40914 1cg5B 141 37.50 a.1.1.2 15585 2pfxA 191 38.22 1qnoA 344 38.62 c.1.8.3 28838 1lba 146 38.76 2i9sA 97 39.54 1z3aA 168 40.51 c.97.1.2 124396 2iyvA 184 43.40 c.37.1.2 137812 1h2aL 567 44.16 e.18.1.1 43299 1a6dA 545 44.90 a.129.1.2,c.8.5.2,d.56.1.2 19488,30819,38936 1fxxA 482 45.24 c.55.3.5 33726 2ijcA 145 45.78 a.152.1.3 137465 1lqsL 157 46.00 a.26.1.3 74192 2drpA 66 48.02 g.37.1.1,g.37.1.1 45026,45027 2g1kA 176 48.90 c.37.1.2 134519 2p13A 90 49.26 2azqA 311 49.95 1wywA 230 49.99 1r89A 437 50.29 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 1ttzA 87 50.46 c.47.1.1 107309 1odoA 408 50.71 a.104.1.1 92783 2ezhA 75 50.74 a.4.1.2 16029 1vkeA 133 51.41 a.152.1.2 108650 3bomA 142 51.83 2j9uA 96 51.99 a.24.28.1 138155 1kluD 239 52.15 b.40.2.2,d.15.6.1 72728,72729 2ajjA 28 53.07 1maiA 131 53.37 b.55.1.1 26951 2p57A 144 54.09 1ldjB 90 54.31 g.44.1.1 73850 2cfaA 217 54.68 1oywA 523 54.79 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1totA 52 54.87 2p4pA 86 55.46 1b08A 158 56.14 d.169.1.1,h.1.1.1 42416,45423 2gcfA 73 56.39 1yk3A 210 56.81 d.108.1.1 123493 1zq6A 359 57.25 1uuhA 159 57.94 d.169.1.4 100008 1b0aA 288 58.01 c.2.1.7,c.58.1.2 30286,33934 3canA 182 59.14 1gu9A 177 59.34 a.152.1.1 65540 2hwvA 121 59.48 1acf 125 60.22 1tyhA 248 60.60 a.132.1.3 107458 2nllA 66 62.05 g.39.1.2 45109 1zu1A 127 62.28 2cycA 375 62.97 1mugA 168 63.57 c.18.1.2 31030 1kp8A 547 64.45 a.129.1.1,c.8.5.1,d.56.1.1 84414,84415,84416 3bw8A 217 65.12 1xtzA 264 65.27 2h8fA 143 65.51 a.1.1.2 136239 2i66A 262 65.93 2pjmA 226 66.07 2dgdA 223 66.14 2d5xA 141 66.21 a.1.1.2 131282 1i4fA 275 66.54 b.1.1.2,d.19.1.1 61687,61688 2q0tA 263 68.19 1s1hN 36 68.24 i.1.1.1 105166 1hyiA 65 68.93 g.50.1.1 61406 1zc3B 113 70.05 b.55.1.1 124881 2hi7B 176 70.17 2uvjA 408 70.37 1js8A 394 73.90 a.86.1.1,b.112.1.1 67219,67220 2bf9A 36 74.00 j.6.1.1 116717 1cyxA 205 74.48 b.6.1.2 23023 1qhiA 366 74.63 c.37.1.1 31860 2o3sA 262 77.37 1a1gA 90 77.40 g.37.1.1,g.37.1.1,g.37.1.1 45010,45011,45012 1by4A 82 80.41 g.39.1.2 45110 1dlyA 164 80.49 a.1.1.1 14983 2i5nC 336 80.72 a.138.1.2 137063 2pofA 227 80.89 1ykhA 108 81.01 a.252.1.2 123518 1g03A 134 81.52 a.73.1.1 60162 2cjsC 62 81.73 2elxA 35 81.80 1pls 113 83.74 1lk5A 229 83.79 c.124.1.4,d.58.40.1 73960,73961 2occE 109 84.39 a.118.11.1 19224 1mai 131 84.69 1g2fC 90 85.31 k.12.1.1 60222 1yo5C 97 85.87 a.4.5.21 123768 2a4vA 159 86.50 c.47.1.10 126163 3bzwA 274 86.93 1njqA 39 89.89 g.37.1.3 85822