# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oqcA 125 2.00e-15 a.24.15.1 87264 1jr8A 117 2.98e-15 a.24.15.1 67115 2nytA 190 0.7401 2q3pA 112 1.424 d.58.4.4 139798 2aj0A 71 1.571 2dx8A 67 1.925 1aqdA 192 2.870 b.1.1.2,d.19.1.1 21585,38159 3cjdA 198 3.166 1ovxA 67 3.233 g.39.1.11 93622 1p8cA 145 3.683 a.152.1.2 94354 2fqhA 109 4.029 2ahmA 88 4.440 a.8.9.1 126760 1jtkA 136 4.472 c.97.1.1 71862 1r5tA 142 4.749 c.97.1.1 104812 1va6A 518 4.760 d.128.1.4 113598 1wn5A 130 4.889 c.97.1.1 121082 1j55A 95 4.906 a.39.1.2 77078 1jvrA 137 5.254 a.61.1.2 18132 1ieaA 192 5.475 b.1.1.2,d.19.1.1 21631,38205 1uwzA 136 5.534 c.97.1.1 108081 1ctt 294 5.965 2z3hA 130 6.130 1g7eA 122 6.234 c.47.1.7 33055 2fr5A 146 6.374 c.97.1.1 133965 3b8fA 142 6.611 2p09A 78 6.635 1cc8A 73 6.813 d.58.17.1 39343 1wwrA 171 6.859 c.97.1.2 121366 1uaqA 158 6.861 c.97.1.2 88386 2b3jA 159 6.948 c.97.1.2 127787 2ds5A 51 7.533 g.39.1.11 131681 1p6oA 161 7.960 c.97.1.2 94185 1lw1A 177 8.459 a.152.1.1 74290 2eppA 66 8.472 2q0tA 263 8.944 1oywA 523 9.075 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1vkeA 133 9.511 a.152.1.2 108650 1cpzA 68 9.544 d.58.17.1 39351 2hvwA 184 10.26 2qycA 103 10.39 3beyA 96 10.42 1rp4A 389 10.71 a.227.1.1 105027 1mwyA 73 11.22 d.58.17.1 79616 2j9wA 102 11.50 1uw1A 80 13.12 k.42.1.1 100069 1gcwB 135 13.17 a.1.1.2 15591 1fngA 192 13.21 b.1.1.2,d.19.1.1 59904,59905 1cttA 294 13.35 c.97.1.1,c.97.1.1 36022,36023 1tiyA 164 13.95 c.97.1.2 107012 1dxjA 242 14.01 d.2.1.1 36244 1gcvB 136 14.49 a.1.1.2 15589 1wkqA 164 15.34 c.97.1.2 109393 2a8nA 144 15.68 c.97.1.2 126408 2oy9A 98 16.39 2gykB 134 17.85 d.4.1.1 135857 1jwwA 80 17.92 d.58.17.1 71919 1osdA 72 18.17 d.58.17.1 104022 1qnxA 209 19.20 d.111.1.1 40914 2g3kA 94 19.87 a.24.28.1 134562 2elxA 35 20.14 1vq2A 193 20.16 c.97.1.2 114004 2gmyA 153 20.64 a.152.1.3 135398 1tr0A 108 22.39 d.58.4.4 107261 2d8qA 70 22.90 g.85.1.1 131335 1qupA 222 24.38 b.1.8.1,d.58.17.1 22301,39352 1ret 43 25.63 1tyhA 248 26.60 a.132.1.3 107458 2cycA 375 26.94 2h8fB 146 27.05 a.1.1.2 136240 1lqsL 157 27.41 a.26.1.3 74192 1cptA 428 28.02 a.104.1.1 18968 2dktA 143 28.16 2eqoA 140 28.27 2g84A 197 28.67 c.97.1.2 134766 1z3aA 168 28.74 c.97.1.2 124396 1gu9A 177 29.26 a.152.1.1 65540 2uvjA 408 29.32 1a4fA 141 29.69 a.1.1.2 15394 1wpxB 220 30.00 3ccgA 190 30.86 2o4dA 165 32.76 a.152.1.3 138907 1v8qA 85 34.06 b.84.4.1 108428 1gxqA 106 34.25 a.4.6.1 70721 2nx8A 179 34.49 1v1dA 31 34.55 j.6.1.1 119817 1brvA 32 35.33 j.33.1.1 46235 1v4xB 146 36.62 a.1.1.2 108364 2hdpA 63 37.49 2b7oA 464 37.54 c.1.10.8 128047 1a6aA 176 38.93 b.1.1.2,d.19.1.1 21615,38189 2oyoA 196 39.75 1ykhA 108 40.16 a.252.1.2 123518 1cg5B 141 40.22 a.1.1.2 15585 1uh6A 100 40.40 d.15.1.1 99394 2prrA 197 40.96 1c8cA 64 41.21 b.34.13.1 59084 1bbxC 63 42.83 b.34.13.1 37465 1xyiA 66 43.88 1t2bA 397 44.09 2q01A 497 44.11 1bf4A 63 44.14 b.34.13.1 37461 1u8bA 133 45.42 1bnzA 64 46.68 b.34.13.1 37468 1smbA 154 46.79 d.111.1.1 105756 2av1A 275 46.94 b.1.1.2,d.19.1.1 127349,127350 2eloA 37 47.56 1azpA 66 47.65 b.34.13.1 37467 2ajjA 28 47.89 2j9uA 96 48.42 a.24.28.1 138155 1yjrA 75 48.43 1euvA 221 48.68 d.3.1.7 37133 1c3gA 170 48.70 b.4.1.1,b.4.1.1 22831,22832 3bdzA 397 49.95 1b0aA 288 50.42 c.2.1.7,c.58.1.2 30286,33934 1zgwA 139 50.82 2bf9A 36 51.20 j.6.1.1 116717 2bshA 125 52.58 1u84A 90 53.25 a.230.1.1 113114 2opoA 86 53.51 a.39.1.10 139209 3bomA 142 54.04 1f7tA 122 55.04 d.150.1.2 59667 2fipA 115 59.12 2czrA 226 59.75 1js8A 394 62.30 a.86.1.1,b.112.1.1 67219,67220 1s1hN 36 62.94 i.1.1.1 105166 2pfxA 191 63.17 2ijcA 145 63.86 a.152.1.3 137465 2gcfA 73 65.13 1ydxA 406 65.75 d.287.1.2,d.287.1.2 123004,123005 1odoA 408 67.54 a.104.1.1 92783 1ldjB 90 67.95 g.44.1.1 73850 1y3jA 77 68.73 2q4xA 221 70.01 a.132.1.3 139880 1rm6C 161 70.28 a.56.1.1,d.15.4.2 111876,111877 1vf6C 72 71.97 a.194.1.1 100602 1h21A 247 73.40 a.138.1.3 76510 2d09A 407 73.99 1fe0A 68 74.07 d.58.17.1 39345 1cqeA 580 74.11 a.93.1.2,g.3.11.1 18703,44246 1vmjA 151 74.13 d.273.1.1 113679 1maiA 131 74.53 b.55.1.1 26951 3c1lA 188 74.84 1uddA 226 75.67 a.132.1.3 107776 2g2kA 170 75.75 2f9iB 285 75.92 1j7yA 141 76.23 a.1.1.2 66426 2axtZ 62 77.25 1lba 146 80.13 2oq2A 261 81.45 1aw0 72 81.56 1h2aL 567 81.99 e.18.1.1 43299 1wywA 230 82.05 1f6fA 199 82.05 a.26.1.1 16839 1t6eX 381 82.21 b.50.1.2 106564 2ilkA 160 82.51 a.26.1.3 16885 2pdoA 144 82.76 2cfaA 217 82.80 1zoqC 47 84.78 a.153.1.1 125453 2d58A 107 86.32 2ogiA 196 87.00 1w53A 84 87.43 a.186.1.2 109175 1z72A 225 88.52 a.132.1.3 124583 1mai 131 89.66