# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oqcA 125 1.46e-14 a.24.15.1 87264 1jr8A 117 2.00e-14 a.24.15.1 67115 2nytA 190 1.013 2aj0A 71 1.998 2q3pA 112 2.178 d.58.4.4 139798 2dx8A 67 2.211 1jvrA 137 2.883 a.61.1.2 18132 1j55A 95 3.461 a.39.1.2 77078 2fqhA 109 3.498 1aqdA 192 3.742 b.1.1.2,d.19.1.1 21585,38159 3cjdA 198 4.014 1ovxA 67 4.700 g.39.1.11 93622 1p8cA 145 5.148 a.152.1.2 94354 2ahmA 88 5.417 a.8.9.1 126760 1g7eA 122 5.848 c.47.1.7 33055 1ieaA 192 5.868 b.1.1.2,d.19.1.1 21631,38205 1jtkA 136 5.923 c.97.1.1 71862 1r5tA 142 5.949 c.97.1.1 104812 1uwzA 136 7.445 c.97.1.1 108081 1ctt 294 7.885 1wn5A 130 7.907 c.97.1.1 121082 2eppA 66 8.253 2fr5A 146 8.744 c.97.1.1 133965 1cc8A 73 9.338 d.58.17.1 39343 1wwrA 171 9.379 c.97.1.2 121366 2z3hA 130 9.521 3b8fA 142 9.621 2p09A 78 9.645 1lw1A 177 9.793 a.152.1.1 74290 2ds5A 51 10.12 g.39.1.11 131681 1oywA 523 10.33 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2b3jA 159 10.53 c.97.1.2 127787 2q0tA 263 10.57 1uaqA 158 11.98 c.97.1.2 88386 1vkeA 133 12.17 a.152.1.2 108650 1p6oA 161 12.90 c.97.1.2 94185 1va6A 518 13.77 d.128.1.4 113598 2qycA 103 13.82 2gykB 134 14.44 d.4.1.1 135857 1jwwA 80 15.24 d.58.17.1 71919 1cpzA 68 15.26 d.58.17.1 39351 2gmyA 153 15.41 a.152.1.3 135398 3ccgA 190 15.52 2oy9A 98 15.71 1fngA 192 15.87 b.1.1.2,d.19.1.1 59904,59905 1uw1A 80 16.18 k.42.1.1 100069 2hvwA 184 16.29 3beyA 96 16.34 1cttA 294 16.35 c.97.1.1,c.97.1.1 36022,36023 1rp4A 389 16.56 a.227.1.1 105027 1gcwB 135 17.34 a.1.1.2 15591 2j9wA 102 17.73 1lqsL 157 19.33 a.26.1.3 74192 2o4dA 165 19.48 a.152.1.3 138907 1mwyA 73 19.52 d.58.17.1 79616 1gcvB 136 20.75 a.1.1.2 15589 2d8qA 70 22.05 g.85.1.1 131335 1ldjB 90 22.18 g.44.1.1 73850 1osdA 72 22.55 d.58.17.1 104022 1cptA 428 22.78 a.104.1.1 18968 2a8nA 144 23.55 c.97.1.2 126408 2elxA 35 23.77 1tyhA 248 24.42 a.132.1.3 107458 1wkqA 164 24.48 c.97.1.2 109393 1qnxA 209 25.10 d.111.1.1 40914 1tiyA 164 26.04 c.97.1.2 107012 1tr0A 108 26.32 d.58.4.4 107261 1b0aA 288 26.32 c.2.1.7,c.58.1.2 30286,33934 2dktA 143 26.54 1u8bA 133 26.70 1brvA 32 26.83 j.33.1.1 46235 2g3kA 94 28.03 a.24.28.1 134562 1vq2A 193 28.50 c.97.1.2 114004 1dxjA 242 28.82 d.2.1.1 36244 1gxqA 106 30.09 a.4.6.1 70721 1gu9A 177 30.97 a.152.1.1 65540 1v8qA 85 31.58 b.84.4.1 108428 2cycA 375 31.80 1a4fA 141 31.96 a.1.1.2 15394 2oyoA 196 33.54 1zgwA 139 33.75 2eqoA 140 33.83 1ret 43 35.01 1c8cA 64 36.00 b.34.13.1 59084 1bf4A 63 37.87 b.34.13.1 37461 1u84A 90 38.75 a.230.1.1 113114 2h8fB 146 39.07 a.1.1.2 136240 2nx8A 179 39.54 1h2aL 567 40.21 e.18.1.1 43299 1xyiA 66 40.24 2fipA 115 41.61 1t2bA 397 42.24 1azpA 66 42.96 b.34.13.1 37467 2opoA 86 43.28 a.39.1.10 139209 1odoA 408 43.35 a.104.1.1 92783 1euvA 221 43.85 d.3.1.7 37133 1bbxC 63 44.34 b.34.13.1 37465 1qupA 222 44.44 b.1.8.1,d.58.17.1 22301,39352 2b7oA 464 45.08 c.1.10.8 128047 2g84A 197 45.32 c.97.1.2 134766 2hdpA 63 45.86 1bnzA 64 46.55 b.34.13.1 37468 1z3aA 168 46.77 c.97.1.2 124396 1a6aA 176 47.31 b.1.1.2,d.19.1.1 21615,38189 3bdzA 397 47.59 2d09A 407 47.65 1v1dA 31 48.11 j.6.1.1 119817 2uvjA 408 48.30 1smbA 154 49.93 d.111.1.1 105756 1cg5B 141 50.51 a.1.1.2 15585 1ydxA 406 52.17 d.287.1.2,d.287.1.2 123004,123005 2prrA 197 52.33 1wpxB 220 52.78 2ajjA 28 53.98 2ijcA 145 54.01 a.152.1.3 137465 1yjrA 75 54.29 2eloA 37 54.90 1uh6A 100 55.07 d.15.1.1 99394 2pfxA 191 55.55 1v4xB 146 55.89 a.1.1.2 108364 2c2xA 281 57.29 1f7tA 122 57.53 d.150.1.2 59667 2g2kA 170 57.85 1ykhA 108 57.96 a.252.1.2 123518 2q01A 497 59.20 1js8A 394 60.04 a.86.1.1,b.112.1.1 67219,67220 2j9uA 96 61.06 a.24.28.1 138155 2gcfA 73 63.66 2bf9A 36 65.45 j.6.1.1 116717 2ilkA 160 65.79 a.26.1.3 16885 1uddA 226 66.08 a.132.1.3 107776 1wywA 230 67.74 2scuB 388 68.61 c.23.4.1,d.142.1.4 31141,41562 2pdoA 144 70.12 1rm6C 161 70.47 a.56.1.1,d.15.4.2 111876,111877 1c3gA 170 70.50 b.4.1.1,b.4.1.1 22831,22832 1k9uA 78 71.67 a.39.1.10 84348 2ogiA 196 72.11 3c1lA 188 72.32 2av1A 275 72.77 b.1.1.2,d.19.1.1 127349,127350 2czrA 226 74.47 1j7yA 141 76.19 a.1.1.2 66426 2d58A 107 78.42 1fe0A 68 80.97 d.58.17.1 39345 3bomA 142 81.59 1zu1A 127 82.39 2i3sB 36 83.17 2f9iB 285 83.74 1s1hN 36 83.94 i.1.1.1 105166 2oq2A 261 84.06 1qnrA 344 85.47 c.1.8.3 28834 1guuA 52 87.00 a.4.1.3 83332