# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oqcA 125 1.04e-14 a.24.15.1 87264 1jr8A 117 1.61e-14 a.24.15.1 67115 2nytA 190 0.7593 2q3pA 112 1.663 d.58.4.4 139798 2aj0A 71 1.945 2dx8A 67 2.185 1aqdA 192 2.995 b.1.1.2,d.19.1.1 21585,38159 1j55A 95 3.205 a.39.1.2 77078 3cjdA 198 3.264 2fqhA 109 3.901 1jvrA 137 4.005 a.61.1.2 18132 1ovxA 67 4.247 g.39.1.11 93622 1p8cA 145 4.468 a.152.1.2 94354 1g7eA 122 4.496 c.47.1.7 33055 1wwrA 171 4.520 c.97.1.2 121366 1jtkA 136 4.605 c.97.1.1 71862 1ieaA 192 4.989 b.1.1.2,d.19.1.1 21631,38205 2ahmA 88 5.013 a.8.9.1 126760 1cc8A 73 5.147 d.58.17.1 39343 1r5tA 142 5.160 c.97.1.1 104812 1ctt 294 5.522 1wn5A 130 5.548 c.97.1.1 121082 1uwzA 136 5.641 c.97.1.1 108081 1uaqA 158 6.369 c.97.1.2 88386 2b3jA 159 6.589 c.97.1.2 127787 2z3hA 130 6.745 1p6oA 161 6.804 c.97.1.2 94185 3b8fA 142 6.918 2fr5A 146 7.338 c.97.1.1 133965 2eppA 66 7.996 2p09A 78 8.219 2q0tA 263 9.021 2ds5A 51 9.021 g.39.1.11 131681 1mwyA 73 9.375 d.58.17.1 79616 1oywA 523 9.819 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1va6A 518 9.96 d.128.1.4 113598 1gcwB 135 10.23 a.1.1.2 15591 1rp4A 389 10.85 a.227.1.1 105027 2hvwA 184 10.89 1lw1A 177 11.06 a.152.1.1 74290 1cttA 294 11.13 c.97.1.1,c.97.1.1 36022,36023 1vkeA 133 11.44 a.152.1.2 108650 1cpzA 68 11.86 d.58.17.1 39351 2qycA 103 11.89 1gcvB 136 12.06 a.1.1.2 15589 1fngA 192 13.98 b.1.1.2,d.19.1.1 59904,59905 1uw1A 80 14.17 k.42.1.1 100069 1wkqA 164 14.22 c.97.1.2 109393 2gmyA 153 14.33 a.152.1.3 135398 1tiyA 164 14.96 c.97.1.2 107012 2a8nA 144 15.79 c.97.1.2 126408 2oy9A 98 16.02 3beyA 96 16.06 1jwwA 80 16.33 d.58.17.1 71919 1osdA 72 17.45 d.58.17.1 104022 2gykB 134 17.48 d.4.1.1 135857 2cycA 375 17.68 1vq2A 193 19.68 c.97.1.2 114004 2elxA 35 20.10 3ccgA 190 21.09 2o4dA 165 21.36 a.152.1.3 138907 2j9wA 102 21.54 2dktA 143 21.72 2h8fB 146 24.44 a.1.1.2 136240 1qupA 222 24.51 b.1.8.1,d.58.17.1 22301,39352 1brvA 32 24.72 j.33.1.1 46235 2d8qA 70 25.63 g.85.1.1 131335 1cptA 428 25.71 a.104.1.1 18968 2g3kA 94 25.92 a.24.28.1 134562 1qnxA 209 25.93 d.111.1.1 40914 2g84A 197 27.23 c.97.1.2 134766 1ldjB 90 27.40 g.44.1.1 73850 2nx8A 179 27.49 1dxjA 242 28.35 d.2.1.1 36244 1z3aA 168 28.56 c.97.1.2 124396 1v8qA 85 28.63 b.84.4.1 108428 1tr0A 108 29.28 d.58.4.4 107261 1ret 43 29.73 1lqsL 157 30.05 a.26.1.3 74192 1tyhA 248 30.43 a.132.1.3 107458 1gxqA 106 30.88 a.4.6.1 70721 1cg5B 141 31.17 a.1.1.2 15585 1v4xB 146 32.04 a.1.1.2 108364 1t2bA 397 32.17 1uh6A 100 33.72 d.15.1.1 99394 1a4fA 141 34.18 a.1.1.2 15394 1gu9A 177 34.79 a.152.1.1 65540 2ajjA 28 35.27 1a6aA 176 35.45 b.1.1.2,d.19.1.1 21615,38189 2eqoA 140 35.84 1v1dA 31 37.10 j.6.1.1 119817 1c8cA 64 37.98 b.34.13.1 59084 2hdpA 63 38.34 3bdzA 397 39.08 1smbA 154 39.47 d.111.1.1 105756 1bf4A 63 40.27 b.34.13.1 37461 2czrA 226 40.58 1zgwA 139 40.95 1u8bA 133 41.05 2oyoA 196 42.29 1xyiA 66 43.41 2fipA 115 43.49 2eloA 37 44.71 1u84A 90 44.92 a.230.1.1 113114 1b0aA 288 46.03 c.2.1.7,c.58.1.2 30286,33934 1wpxB 220 46.25 1yjrA 75 46.36 1bbxC 63 47.11 b.34.13.1 37465 1bnzA 64 47.49 b.34.13.1 37468 3bomA 142 47.58 2b7oA 464 48.28 c.1.10.8 128047 2d09A 407 48.33 2uvjA 408 48.37 1euvA 221 48.40 d.3.1.7 37133 2av1A 275 48.76 b.1.1.2,d.19.1.1 127349,127350 1c3gA 170 51.73 b.4.1.1,b.4.1.1 22831,22832 2opoA 86 53.83 a.39.1.10 139209 2g2kA 170 53.89 2prrA 197 54.18 2pfxA 191 54.48 1azpA 66 54.48 b.34.13.1 37467 2ijcA 145 54.94 a.152.1.3 137465 2j9uA 96 56.12 a.24.28.1 138155 2bf9A 36 56.67 j.6.1.1 116717 1h2aL 567 57.16 e.18.1.1 43299 3c1lA 188 57.43 1ykhA 108 58.84 a.252.1.2 123518 2q01A 497 60.56 1zbdB 134 60.61 g.50.1.1 45359 2ilkA 160 60.62 a.26.1.3 16885 1f7tA 122 62.15 d.150.1.2 59667 2d58A 107 63.29 2gcfA 73 64.23 1uddA 226 64.61 a.132.1.3 107776 1ydxA 406 66.10 d.287.1.2,d.287.1.2 123004,123005 2bshA 125 66.14 1odoA 408 68.05 a.104.1.1 92783 1fe0A 68 68.09 d.58.17.1 39345 1js8A 394 70.76 a.86.1.1,b.112.1.1 67219,67220 1cqeA 580 71.45 a.93.1.2,g.3.11.1 18703,44246 2cjsC 62 72.05 1s1hN 36 74.02 i.1.1.1 105166 1j7yA 141 74.28 a.1.1.2 66426 1t6eX 381 74.76 b.50.1.2 106564 1y3jA 77 75.16 2axtZ 62 75.33 2c2xA 281 77.36 1k9uA 78 79.18 a.39.1.10 84348 1w53A 84 79.72 a.186.1.2 109175 1wywA 230 80.79 2pdoA 144 81.25 2gb4A 252 86.56 1avsA 90 87.31 a.39.1.5 17226 1vmjA 151 88.81 d.273.1.1 113679 2oq2A 261 88.86