# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oqcA 125 3.06e-17 a.24.15.1 87264 1jr8A 117 7.66e-17 a.24.15.1 67115 2nytA 190 1.126 2q3pA 112 1.240 d.58.4.4 139798 2aj0A 71 1.881 1jvrA 137 2.998 a.61.1.2 18132 2z3hA 130 3.328 1g7eA 122 4.181 c.47.1.7 33055 1r5tA 142 4.184 c.97.1.1 104812 2b3jA 159 5.096 c.97.1.2 127787 1p6oA 161 5.276 c.97.1.2 94185 1jtkA 136 5.323 c.97.1.1 71862 1uaqA 158 5.388 c.97.1.2 88386 1uwzA 136 5.420 c.97.1.1 108081 1wn5A 130 5.938 c.97.1.1 121082 1tr0A 108 7.670 d.58.4.4 107261 2cycA 375 8.849 3b8fA 142 9.479 1lw1A 177 9.95 a.152.1.1 74290 1wwrA 171 10.36 c.97.1.2 121366 2dx8A 67 10.58 1vq2A 193 11.31 c.97.1.2 114004 2fr5A 146 11.55 c.97.1.1 133965 2qycA 103 12.50 1cc8A 73 12.71 d.58.17.1 39343 2hvwA 184 14.76 2gmyA 153 14.81 a.152.1.3 135398 2o4dA 165 16.27 a.152.1.3 138907 1aqdA 192 17.59 b.1.1.2,d.19.1.1 21585,38159 1cpzA 68 17.72 d.58.17.1 39351 1ctt 294 18.29 1gu9A 177 18.86 a.152.1.1 65540 2ahmA 88 21.68 a.8.9.1 126760 1qupA 222 21.87 b.1.8.1,d.58.17.1 22301,39352 1kp8A 547 24.03 a.129.1.1,c.8.5.1,d.56.1.1 84414,84415,84416 2gcfA 73 24.51 2g84A 197 24.91 c.97.1.2 134766 1by4A 82 25.53 g.39.1.2 45110 1osdA 72 25.79 d.58.17.1 104022 1jwwA 80 25.90 d.58.17.1 71919 1ret 43 26.27 2nx8A 179 29.16 1z3aA 168 31.05 c.97.1.2 124396 1mwyA 73 31.67 d.58.17.1 79616 1dszB 85 31.85 g.39.1.2 45108 2av1A 275 32.27 b.1.1.2,d.19.1.1 127349,127350 2ezhA 75 33.84 a.4.1.2 16029 2czrA 226 34.85 1ieaA 192 36.56 b.1.1.2,d.19.1.1 21631,38205 1gluA 81 36.59 g.39.1.2 45124 2bv5A 282 37.24 1ydxA 406 37.84 d.287.1.2,d.287.1.2 123004,123005 1zgwA 139 37.88 2nllB 103 38.01 g.39.1.2 45115 1a6yA 95 39.13 g.39.1.2 45131 1yjrA 75 39.17 2q0tA 263 40.65 2gb4A 252 41.51 1dszA 86 42.65 g.39.1.2 45129 1aw0 72 43.91 1tuwA 109 44.86 d.58.4.8 107346 1e2kA 331 45.96 c.37.1.1 31854 1oywA 523 46.80 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2a8nA 144 46.81 c.97.1.2 126408 2cklB 165 46.81 2q1zB 195 47.11 2evvA 207 48.04 1dmhA 311 48.80 b.3.6.1 22633 2fqhA 109 50.79 1hocA 272 51.30 b.1.1.2,d.19.1.1 20815,38297 1hcqA 84 51.43 g.39.1.2 45117 1ovxA 67 55.56 g.39.1.11 93622 2hanB 119 55.62 g.39.1.2 136292 1i5gA 144 63.46 c.47.1.10 61784 2g3kA 94 67.62 a.24.28.1 134562 1a6dA 545 69.74 a.129.1.2,c.8.5.2,d.56.1.2 19488,30819,38936 1t0tV 248 70.14 d.58.4.10 106229 1latA 82 70.39 g.39.1.2 45122 2eppA 66 71.46 1rxqA 178 71.77 a.213.1.1 105118 2c7aA 78 72.81 1y2tA 142 74.48 b.97.1.2 116407 1smbA 154 74.54 d.111.1.1 105756 2ooqA 286 76.88 1c3gA 170 78.27 b.4.1.1,b.4.1.1 22831,22832 2oy9A 98 78.28 2fy6A 143 80.26 c.47.1.10 134344 1bnzA 64 81.89 b.34.13.1 37468 1x12A 208 81.92 1cttA 294 82.86 c.97.1.1,c.97.1.1 36022,36023 1g2nA 264 86.70 a.123.1.1 60227 2ds5A 51 87.87 g.39.1.11 131681 2j5bA 348 88.05