# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oqcA 125 4.29e-16 a.24.15.1 87264 1jr8A 117 1.10e-15 a.24.15.1 67115 2nytA 190 0.7618 2dx8A 67 1.281 2aj0A 71 1.519 2fqhA 109 2.285 1jvrA 137 2.697 a.61.1.2 18132 2q3pA 112 2.716 d.58.4.4 139798 3cjdA 198 3.070 1r5tA 142 4.353 c.97.1.1 104812 1aqdA 192 4.459 b.1.1.2,d.19.1.1 21585,38159 1ovxA 67 4.709 g.39.1.11 93622 2eppA 66 4.957 2p09A 78 5.087 2ahmA 88 5.592 a.8.9.1 126760 2ds5A 51 5.988 g.39.1.11 131681 1jtkA 136 6.048 c.97.1.1 71862 1uwzA 136 6.553 c.97.1.1 108081 1va6A 518 6.559 d.128.1.4 113598 1wn5A 130 6.688 c.97.1.1 121082 1ieaA 192 6.898 b.1.1.2,d.19.1.1 21631,38205 1wwrA 171 7.150 c.97.1.2 121366 3b8fA 142 8.003 2z3hA 130 8.710 2fr5A 146 8.762 c.97.1.1 133965 2b3jA 159 9.325 c.97.1.2 127787 1ctt 294 9.543 1oywA 523 11.32 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1ydxA 406 11.42 d.287.1.2,d.287.1.2 123004,123005 1g7eA 122 12.28 c.47.1.7 33055 1uaqA 158 12.32 c.97.1.2 88386 2dktA 143 12.44 1p6oA 161 12.54 c.97.1.2 94185 1uw1A 80 12.84 k.42.1.1 100069 1j55A 95 13.37 a.39.1.2 77078 1cc8A 73 13.63 d.58.17.1 39343 1jwwA 80 13.88 d.58.17.1 71919 1brvA 32 14.93 j.33.1.1 46235 1cpzA 68 17.03 d.58.17.1 39351 1cttA 294 17.04 c.97.1.1,c.97.1.1 36022,36023 2nx8A 179 17.22 2b7oA 464 17.29 c.1.10.8 128047 1u8bA 133 17.90 1ldjB 90 18.22 g.44.1.1 73850 2cycA 375 18.68 2gykB 134 19.55 d.4.1.1 135857 1gxqA 106 19.62 a.4.6.1 70721 2q01A 497 19.93 2elxA 35 20.65 1zgwA 139 20.80 1gcwB 135 20.80 a.1.1.2 15591 2hvwA 184 21.86 2d8qA 70 22.68 g.85.1.1 131335 1gcvB 136 22.93 a.1.1.2 15589 1rp4A 389 23.40 a.227.1.1 105027 1osdA 72 24.79 d.58.17.1 104022 1mwyA 73 25.66 d.58.17.1 79616 2oy9A 98 25.99 1fngA 192 26.76 b.1.1.2,d.19.1.1 59904,59905 1odoA 408 27.22 a.104.1.1 92783 2qycA 103 27.47 1tr0A 108 28.23 d.58.4.4 107261 2uvjA 408 29.32 2j9wA 102 29.64 1c3gA 170 31.79 b.4.1.1,b.4.1.1 22831,22832 1wywA 230 32.25 1a4fA 141 32.74 a.1.1.2 15394 1lqsL 157 33.21 a.26.1.3 74192 1a6aA 176 33.69 b.1.1.2,d.19.1.1 21615,38189 1b0aA 288 34.19 c.2.1.7,c.58.1.2 30286,33934 1vq2A 193 34.74 c.97.1.2 114004 2gb4A 252 34.92 1smbA 154 35.20 d.111.1.1 105756 1qnxA 209 35.46 d.111.1.1 40914 1js8A 394 38.07 a.86.1.1,b.112.1.1 67219,67220 2ajjA 28 40.25 2eloA 37 41.44 2g3kA 94 41.92 a.24.28.1 134562 1bf4A 63 42.15 b.34.13.1 37461 1c8cA 64 42.62 b.34.13.1 59084 1znfA 25 43.63 g.37.1.1 45036 2fipA 115 43.83 1wpxB 220 48.20 1j7yA 141 48.73 a.1.1.2 66426 2f9iB 285 49.01 1qupA 222 49.24 b.1.8.1,d.58.17.1 22301,39352 1t2bA 397 49.86 2p57A 144 50.43 1cptA 428 50.64 a.104.1.1 18968 2g2kA 170 50.65 1azpA 66 51.38 b.34.13.1 37467 1xyiA 66 52.52 1bbxC 63 53.55 b.34.13.1 37465 1zu1A 127 53.61 3bdzA 397 54.12 2riqA 160 54.21 1ret 43 55.35 1vd4A 62 55.80 g.41.3.1 113613 1cqeA 580 56.31 a.93.1.2,g.3.11.1 18703,44246 1bnzA 64 56.83 b.34.13.1 37468 2eqoA 140 57.59 2h8fB 146 57.88 a.1.1.2 136240 1tyhA 248 58.07 a.132.1.3 107458 1yjrA 75 58.67 1zoqC 47 58.89 a.153.1.1 125453 1ykhA 108 62.25 a.252.1.2 123518 1s1hN 36 62.61 i.1.1.1 105166 1v8qA 85 62.66 b.84.4.1 108428 2hdpA 63 63.55 1u84A 90 63.96 a.230.1.1 113114 2o4dA 165 64.79 a.152.1.3 138907 2j7jA 85 67.29 2yrmA 43 68.03 1euvA 221 68.29 d.3.1.7 37133 1h2aL 567 68.41 e.18.1.1 43299 2czrA 226 69.47 1a3oA 141 69.52 a.1.1.2 15274 3bomA 142 72.37 2h8fA 143 73.38 a.1.1.2 136239 2gpuA 230 73.80 a.123.1.1 135493 1b08A 158 73.82 d.169.1.1,h.1.1.1 42416,45423 2oq2A 261 73.90 1uh6A 100 76.49 d.15.1.1 99394 2a8nA 144 77.95 c.97.1.2 126408 2bs3C 256 78.38 1v4xB 146 79.75 a.1.1.2 108364 1wkqA 164 80.14 c.97.1.2 109393 1cg5B 141 80.15 a.1.1.2 15585 2g84A 197 80.47 c.97.1.2 134766 1vf6C 72 80.60 a.194.1.1 100602 1xm0A 147 82.39 b.88.1.3 122140 2c2xA 281 82.43 2pdoA 144 82.63 1w53A 84 83.15 a.186.1.2 109175 2bshA 125 84.98 1q4gA 553 88.96 a.93.1.2,g.3.11.1 95789,95790