# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oqcA 125 1.63e-22 a.24.15.1 87264 1jr8A 117 7.18e-22 a.24.15.1 67115 2qvwA 756 0.8707 2fqhA 109 1.386 1tyhA 248 1.540 a.132.1.3 107458 2nytA 190 2.249 1jk0A 419 3.717 a.25.1.2 63142 2aj0A 71 4.235 1klqA 197 4.424 d.135.1.1 68689 1aqdA 192 4.797 b.1.1.2,d.19.1.1 21585,38159 2hhiA 204 5.315 2imqX 282 5.560 2rfiA 285 6.724 1r5tA 142 7.778 c.97.1.1 104812 1ldjB 90 7.860 g.44.1.1 73850 1ctt 294 8.575 3cjdA 198 9.198 2z3hA 130 10.74 1b8rA 108 10.89 a.39.1.4 17201 1jvrA 137 11.02 a.61.1.2 18132 1k9uA 78 11.36 a.39.1.10 84348 1t2bA 397 11.74 1hniA 558 11.75 c.55.3.1,e.8.1.2 33586,43044 2pidA 356 12.64 1wywA 230 13.81 1j55A 95 14.07 a.39.1.2 77078 1gowA 489 14.59 c.1.8.4 28981 2eppA 66 15.11 1ef1A 294 15.70 a.11.2.1,b.55.1.5,d.15.1.4 16368,27003,37611 2ahmA 88 16.91 a.8.9.1 126760 1aye 401 17.01 1vd4A 62 17.91 g.41.3.1 113613 1ut8A 291 18.18 a.60.7.1,c.120.1.2 99908,99909 2p09A 78 18.30 2in1A 175 18.83 d.20.1.4 137521 1mixA 206 19.04 a.11.2.1,b.55.1.5 79166,79167 1bf2 750 19.09 1e2kA 331 19.19 c.37.1.1 31854 2j89A 261 19.42 1ovxA 67 20.45 g.39.1.11 93622 1ee9A 320 21.50 c.2.1.7,c.58.1.2 30288,33936 1ubkL 534 22.23 e.18.1.1 88422 2e52A 300 22.69 1b0aA 288 22.82 c.2.1.7,c.58.1.2 30286,33934 1jtkA 136 23.75 c.97.1.1 71862 1nl1A 147 23.86 g.14.1.1,g.32.1.1 91949,91950 2dktA 143 24.01 1ieaA 192 24.60 b.1.1.2,d.19.1.1 21631,38205 2i66A 262 25.05 1a7aA 432 25.13 c.2.1.4,c.23.12.3 30104,31364 1b3rA 431 25.63 c.2.1.4,c.23.12.3 30106,31366 1uwzA 136 26.52 c.97.1.1 108081 2hvwA 184 27.55 2o3sA 262 27.61 2goyA 275 28.80 2pa6A 427 29.51 1eb7A 323 29.52 a.3.1.5,a.3.1.5 59404,59405 1dloB 427 30.40 e.8.1.2 43041 2ds5A 51 30.95 g.39.1.11 131681 1eetA 557 31.40 c.55.3.1,e.8.1.2 33608,43078 1lqsL 157 32.13 a.26.1.3 74192 1f7tA 122 32.61 d.150.1.2 59667 2ffeA 311 32.62 c.143.1.1 133381 1j3gA 187 32.66 d.118.1.1 77075 1avsA 90 32.67 a.39.1.5 17226 1l6nA 289 33.97 a.61.1.1,a.73.1.1 73624,73625 1cc8A 73 34.08 d.58.17.1 39343 1hwyA 501 35.37 c.2.1.7,c.58.1.1 30262,33910 3b8fA 142 37.06 1zzmA 259 37.57 c.1.9.12 125911 2a8nA 144 37.82 c.97.1.2 126408 1cttA 294 38.61 c.97.1.1,c.97.1.1 36022,36023 1p6oA 161 39.62 c.97.1.2 94185 1g8iA 190 41.68 a.39.1.5 60363 3coxA 507 42.19 c.3.1.2,d.16.1.1 30332,37863 1brvA 32 42.30 j.33.1.1 46235 1uw1A 80 42.95 k.42.1.1 100069 1ak0A 270 42.95 a.124.1.2 19345 2inpA 494 46.82 1ydxA 406 46.86 d.287.1.2,d.287.1.2 123004,123005 1g2nA 264 47.15 a.123.1.1 60227 2dx8A 67 47.74 1i49A 224 48.90 a.238.1.2 61679 1si6X 282 49.46 d.151.1.2 118968 1gxqA 106 51.62 a.4.6.1 70721 1n71A 180 52.43 d.108.1.1 85370 1zu1A 127 55.07 2oizD 135 55.25 1s9rA 410 56.12 d.126.1.4 98758 1ll0A 339 56.24 c.68.1.14 73995 2ob9A 130 58.03 2jejA 358 58.19 d.240.1.1,e.8.1.7 138284,138285 2iiiA 135 59.50 1s35A 214 60.40 a.7.1.1,a.7.1.1 98420,98421 2o8jA 281 60.47 2z30A 320 60.67 1vk2A 204 60.74 c.18.1.2 100845 1jwwA 80 60.91 d.58.17.1 71919 2q4zA 312 62.72 2cklB 165 63.33 2h88B 252 64.63 2a97A 439 65.76 2qg8A 163 66.65 1qtwA 285 67.77 c.1.15.1 29392 1r12A 258 68.51 c.23.14.3 96780 1wdcB 156 68.91 a.39.1.5 17302 1c3gA 170 69.28 b.4.1.1,b.4.1.1 22831,22832 1nfiA 301 71.35 b.1.18.1,b.2.5.3 21942,22455 1cll 148 74.25 1u8bA 133 74.86 2d8qA 70 75.11 g.85.1.1 131335 2nx8A 179 75.46 1gcwB 135 75.73 a.1.1.2 15591 1ttzA 87 77.42 c.47.1.1 107309 1g99A 408 78.00 c.55.1.2,c.55.1.2 33457,33458 2z8xA 617 79.22 2elxA 35 79.75 1cpzA 68 80.48 d.58.17.1 39351 2fvkA 559 82.64 b.92.1.3,c.1.9.6 134204,134205 1ynpA 317 83.14 1lqaA 346 83.43 c.1.7.1 84674 1lehA 364 84.55 c.2.1.7,c.58.1.1 30268,33916 2prrA 197 86.94 1t0bA 252 87.20 c.23.16.6 106199 2obhA 143 88.22 2fpqA 444 89.16 1gcvB 136 89.45 a.1.1.2 15589