# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oqcA 125 3.90e-16 a.24.15.1 87264 1jr8A 117 9.97e-16 a.24.15.1 67115 2nytA 190 0.3686 2dx8A 67 0.7589 2aj0A 71 1.007 2q3pA 112 1.351 d.58.4.4 139798 2fqhA 109 1.467 3cjdA 198 2.058 1jvrA 137 2.124 a.61.1.2 18132 2ahmA 88 2.545 a.8.9.1 126760 1r5tA 142 2.585 c.97.1.1 104812 2eppA 66 2.651 1jtkA 136 3.406 c.97.1.1 71862 1ovxA 67 3.656 g.39.1.11 93622 1aqdA 192 3.755 b.1.1.2,d.19.1.1 21585,38159 1uwzA 136 3.833 c.97.1.1 108081 1wwrA 171 4.141 c.97.1.2 121366 1wn5A 130 4.176 c.97.1.1 121082 2p09A 78 4.234 1ctt 294 4.822 3b8fA 142 4.871 2ds5A 51 4.988 g.39.1.11 131681 2b3jA 159 5.130 c.97.1.2 127787 1va6A 518 5.204 d.128.1.4 113598 2fr5A 146 5.285 c.97.1.1 133965 2z3hA 130 5.432 1ieaA 192 5.690 b.1.1.2,d.19.1.1 21631,38205 1j55A 95 6.041 a.39.1.2 77078 2dktA 143 6.079 1uaqA 158 6.440 c.97.1.2 88386 1p6oA 161 6.493 c.97.1.2 94185 1g7eA 122 6.686 c.47.1.7 33055 1oywA 523 6.705 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1ydxA 406 7.718 d.287.1.2,d.287.1.2 123004,123005 1cttA 294 8.223 c.97.1.1,c.97.1.1 36022,36023 2nx8A 179 9.326 1cc8A 73 9.518 d.58.17.1 39343 2hvwA 184 9.611 1brvA 32 9.96 j.33.1.1 46235 1jwwA 80 10.62 d.58.17.1 71919 1u8bA 133 10.92 1uw1A 80 11.06 k.42.1.1 100069 1zgwA 139 11.71 1cpzA 68 11.91 d.58.17.1 39351 1ldjB 90 12.09 g.44.1.1 73850 2qycA 103 13.03 1vq2A 193 13.42 c.97.1.2 114004 1gcwB 135 13.55 a.1.1.2 15591 2q01A 497 13.64 1tr0A 108 14.96 d.58.4.4 107261 1lqsL 157 15.01 a.26.1.3 74192 1gxqA 106 15.05 a.4.6.1 70721 2elxA 35 15.12 1gcvB 136 16.70 a.1.1.2 15589 1qnxA 209 17.21 d.111.1.1 40914 2gb4A 252 18.36 1rp4A 389 18.77 a.227.1.1 105027 2b7oA 464 18.97 c.1.10.8 128047 1smbA 154 19.42 d.111.1.1 105756 1osdA 72 19.60 d.58.17.1 104022 1mwyA 73 21.27 d.58.17.1 79616 2oy9A 98 21.46 1c3gA 170 22.02 b.4.1.1,b.4.1.1 22831,22832 2j9wA 102 22.09 2g3kA 94 23.34 a.24.28.1 134562 1b0aA 288 24.02 c.2.1.7,c.58.1.2 30286,33934 1fngA 192 24.03 b.1.1.2,d.19.1.1 59904,59905 1a4fA 141 24.22 a.1.1.2 15394 1odoA 408 24.51 a.104.1.1 92783 2czrA 226 25.90 1wywA 230 26.55 2eloA 37 27.55 1cqeA 580 28.07 a.93.1.2,g.3.11.1 18703,44246 1a6aA 176 28.17 b.1.1.2,d.19.1.1 21615,38189 1u84A 90 28.55 a.230.1.1 113114 2j7jA 85 28.94 2fipA 115 29.77 1t2bA 397 31.46 2uvjA 408 33.78 1znfA 25 34.97 g.37.1.1 45036 1qupA 222 35.12 b.1.8.1,d.58.17.1 22301,39352 1ret 43 35.57 2riqA 160 36.88 1wkqA 164 37.78 c.97.1.2 109393 1vd4A 62 38.28 g.41.3.1 113613 2p57A 144 38.80 1p8cA 145 38.87 a.152.1.2 94354 1js8A 394 39.21 a.86.1.1,b.112.1.1 67219,67220 2hdpA 63 39.63 2cycA 375 39.76 2g84A 197 39.82 c.97.1.2 134766 1w53A 84 39.94 a.186.1.2 109175 2a8nA 144 40.16 c.97.1.2 126408 1q4gA 553 40.32 a.93.1.2,g.3.11.1 95789,95790 1tyhA 248 41.13 a.132.1.3 107458 1s1hN 36 42.24 i.1.1.1 105166 1zoqC 47 42.56 a.153.1.1 125453 1yjrA 75 42.79 1j7yA 141 42.88 a.1.1.2 66426 2bshA 125 43.57 2h8fB 146 43.96 a.1.1.2 136240 1cptA 428 44.81 a.104.1.1 18968 2d8qA 70 45.24 g.85.1.1 131335 1bf4A 63 45.95 b.34.13.1 37461 2g2kA 170 45.95 2eqoA 140 45.96 3bdzA 397 46.75 1ykhA 108 46.88 a.252.1.2 123518 2oq2A 261 47.03 1totA 52 47.40 1h2aL 567 49.26 e.18.1.1 43299 1c8cA 64 50.23 b.34.13.1 59084 2ajjA 28 50.80 2o4dA 165 51.50 a.152.1.3 138907 1azpA 66 52.96 b.34.13.1 37467 1tiyA 164 53.65 c.97.1.2 107012 1bbxC 63 54.70 b.34.13.1 37465 2ilkA 160 55.98 a.26.1.3 16885 1z3aA 168 57.43 c.97.1.2 124396 3beyA 96 57.52 2bs3C 256 57.53 2yrmA 43 57.95 1zu1A 127 57.97 1euvA 221 58.28 d.3.1.7 37133 1aw0 72 58.49 2c2xA 281 58.54 1kz7A 353 58.86 a.87.1.1,b.55.1.1 73333,73334 1xyiA 66 60.06 1a3oA 141 61.03 a.1.1.2 15274 2pdoA 144 61.11 1bnzA 64 61.14 b.34.13.1 37468 3bomA 142 62.81 2gpuA 230 63.66 a.123.1.1 135493 1b08A 158 63.77 d.169.1.1,h.1.1.1 42416,45423 2h8fA 143 63.82 a.1.1.2 136239 1njqA 39 63.87 g.37.1.3 85822 2j9uA 96 66.09 a.24.28.1 138155 1v4xB 146 66.92 a.1.1.2 108364 1cg5B 141 67.66 a.1.1.2 15585 1wpxB 220 68.13 1vf6C 72 69.17 a.194.1.1 100602 2f9iB 285 69.53 2oeeA 117 69.91 1llmC 88 71.43 g.37.1.1,g.37.1.1 91059,91060 3b8mA 280 71.80 2ezhA 75 74.17 a.4.1.2 16029 1a1gA 90 74.22 g.37.1.1,g.37.1.1,g.37.1.1 45010,45011,45012 1lw1A 177 74.51 a.152.1.1 74290 1r89A 437 76.25 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 1iw4A 55 76.59 g.68.1.1 71469 1a5tA 334 76.68 a.80.1.1,c.37.1.20 18450,32423 2gykB 134 76.91 d.4.1.1 135857 2beqD 48 77.16 2e2rA 244 77.42 1xm0A 147 77.48 b.88.1.3 122140 2a4vA 159 84.04 c.47.1.10 126163 3ccgA 190 87.77 1wpkA 146 88.01 2p5qA 170 88.71 3bw8A 217 89.67