# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oqcA 125 1.37e-15 a.24.15.1 87264 1jr8A 117 2.27e-15 a.24.15.1 67115 1jvrA 137 0.9871 a.61.1.2 18132 2nytA 190 1.918 1aqdA 192 2.271 b.1.1.2,d.19.1.1 21585,38159 2dx8A 67 2.327 3cjdA 198 2.488 1ieaA 192 3.060 b.1.1.2,d.19.1.1 21631,38205 2q3pA 112 3.400 d.58.4.4 139798 2aj0A 71 3.594 1ovxA 67 4.207 g.39.1.11 93622 2fqhA 109 4.683 1r5tA 142 5.463 c.97.1.1 104812 2eppA 66 6.807 1jtkA 136 6.977 c.97.1.1 71862 3b8fA 142 7.852 1uwzA 136 7.906 c.97.1.1 108081 1j55A 95 8.108 a.39.1.2 77078 2ds5A 51 8.750 g.39.1.11 131681 1wn5A 130 9.103 c.97.1.1 121082 2p09A 78 9.453 1fngA 192 9.458 b.1.1.2,d.19.1.1 59904,59905 2d8qA 70 9.754 g.85.1.1 131335 2ahmA 88 10.46 a.8.9.1 126760 1jwwA 80 10.75 d.58.17.1 71919 2fr5A 146 10.85 c.97.1.1 133965 2cycA 375 11.47 1wwrA 171 11.67 c.97.1.2 121366 1ctt 294 12.92 2dktA 143 13.89 1g7eA 122 14.43 c.47.1.7 33055 2b3jA 159 14.70 c.97.1.2 127787 2z3hA 130 15.15 1cc8A 73 15.32 d.58.17.1 39343 1oywA 523 16.01 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1va6A 518 16.52 d.128.1.4 113598 1p6oA 161 17.07 c.97.1.2 94185 1uaqA 158 17.20 c.97.1.2 88386 1cpzA 68 18.35 d.58.17.1 39351 1ydxA 406 21.60 d.287.1.2,d.287.1.2 123004,123005 1a6aA 176 21.65 b.1.1.2,d.19.1.1 21615,38189 2b7oA 464 21.98 c.1.10.8 128047 1u8bA 133 22.41 1ldjB 90 22.70 g.44.1.1 73850 1uw1A 80 23.27 k.42.1.1 100069 2o4dA 165 24.46 a.152.1.3 138907 1brvA 32 25.37 j.33.1.1 46235 1p8cA 145 27.02 a.152.1.2 94354 2oy9A 98 27.79 2hvwA 184 27.93 1cttA 294 28.28 c.97.1.1,c.97.1.1 36022,36023 1rp4A 389 28.29 a.227.1.1 105027 2qycA 103 32.11 1zgwA 139 32.49 2ajjA 28 34.93 1lw1A 177 35.67 a.152.1.1 74290 2j9wA 102 35.76 1mwyA 73 36.28 d.58.17.1 79616 1tyhA 248 36.57 a.132.1.3 107458 2nx8A 179 39.75 3beyA 96 42.49 3bw8A 217 43.56 1tr0A 108 43.69 d.58.4.4 107261 2gmyA 153 43.77 a.152.1.3 135398 1vq2A 193 44.45 c.97.1.2 114004 2g3kA 94 46.15 a.24.28.1 134562 1qnxA 209 46.30 d.111.1.1 40914 1v8qA 85 48.02 b.84.4.1 108428 1hocA 272 48.51 b.1.1.2,d.19.1.1 20815,38297 1uddA 226 48.77 a.132.1.3 107776 1b0aA 288 48.93 c.2.1.7,c.58.1.2 30286,33934 1wywA 230 49.76 1f6fA 199 51.46 a.26.1.1 16839 2f9iB 285 51.59 1gxqA 106 53.30 a.4.6.1 70721 1wpxB 220 56.47 2f2gA 221 58.38 a.132.1.3 132816 1uh6A 100 59.03 d.15.1.1 99394 1osdA 72 59.73 d.58.17.1 104022 1lqsL 157 62.39 a.26.1.3 74192 1zu1A 127 62.55 2q4xA 221 64.15 a.132.1.3 139880 1c8cA 64 66.10 b.34.13.1 59084 1js8A 394 66.36 a.86.1.1,b.112.1.1 67219,67220 1ykhA 108 67.24 a.252.1.2 123518 2eqoA 140 67.34 1ret 43 68.12 1guuA 52 69.65 a.4.1.3 83332 2oyoA 196 70.82 2fipA 115 70.83 1odoA 408 71.74 a.104.1.1 92783 1hn6A 110 71.90 g.61.1.1 76721 1t2bA 397 72.94 1azpA 66 73.30 b.34.13.1 37467 1znfA 25 74.41 g.37.1.1 45036 2i66A 262 76.05 1bbxC 63 76.35 b.34.13.1 37465 1qupA 222 76.52 b.1.8.1,d.58.17.1 22301,39352 1xyiA 66 76.71 1a22A 180 77.70 a.26.1.1 16833 1u84A 90 78.12 a.230.1.1 113114 2a8nA 144 78.84 c.97.1.2 126408 1bnzA 64 79.04 b.34.13.1 37468 2o3sA 262 79.23 3ccgA 190 79.29 2hhlA 195 80.00 1bf4A 63 80.05 b.34.13.1 37461 2elxA 35 81.97 1yjrA 75 82.64 2uvjA 408 85.36 1cptA 428 85.48 a.104.1.1 18968 2gykB 134 87.09 d.4.1.1 135857 1a4fA 141 87.69 a.1.1.2 15394 2hdpA 63 88.28 1vd4A 62 89.05 g.41.3.1 113613