# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oqcA 125 8.35e-17 a.24.15.1 87264 1jr8A 117 1.30e-16 a.24.15.1 67115 1jvrA 137 0.1829 a.61.1.2 18132 2nytA 190 0.3378 2dx8A 67 0.3856 1aqdA 192 0.8710 b.1.1.2,d.19.1.1 21585,38159 3cjdA 198 0.9390 1ieaA 192 1.185 b.1.1.2,d.19.1.1 21631,38205 1r5tA 142 1.549 c.97.1.1 104812 1ovxA 67 1.800 g.39.1.11 93622 2p09A 78 1.889 2aj0A 71 2.120 2eppA 66 2.211 1wn5A 130 2.468 c.97.1.1 121082 1jtkA 136 2.732 c.97.1.1 71862 2q3pA 112 2.838 d.58.4.4 139798 3b8fA 142 2.842 1uwzA 136 3.014 c.97.1.1 108081 2fqhA 109 3.039 1wwrA 171 3.516 c.97.1.2 121366 1uw1A 80 3.617 k.42.1.1 100069 2fr5A 146 3.853 c.97.1.1 133965 1g7eA 122 3.855 c.47.1.7 33055 1va6A 518 4.111 d.128.1.4 113598 2ds5A 51 4.145 g.39.1.11 131681 2z3hA 130 4.239 1ctt 294 4.344 2b3jA 159 4.459 c.97.1.2 127787 1jwwA 80 4.525 d.58.17.1 71919 2dktA 143 4.631 1zgwA 139 5.129 2ahmA 88 5.387 a.8.9.1 126760 1p6oA 161 5.447 c.97.1.2 94185 1fngA 192 5.497 b.1.1.2,d.19.1.1 59904,59905 1uaqA 158 5.543 c.97.1.2 88386 1brvA 32 5.895 j.33.1.1 46235 1cc8A 73 7.554 d.58.17.1 39343 1gxqA 106 7.739 a.4.6.1 70721 1cttA 294 8.001 c.97.1.1,c.97.1.1 36022,36023 1oywA 523 8.750 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2hvwA 184 8.754 1ydxA 406 8.893 d.287.1.2,d.287.1.2 123004,123005 2cycA 375 9.279 1rp4A 389 9.604 a.227.1.1 105027 2nx8A 179 10.04 1u8bA 133 10.96 1a6aA 176 11.16 b.1.1.2,d.19.1.1 21615,38189 1cpzA 68 11.44 d.58.17.1 39351 2ajjA 28 11.49 3bw8A 217 11.63 1h2aL 567 13.00 e.18.1.1 43299 1vq2A 193 13.23 c.97.1.2 114004 1p8cA 145 13.26 a.152.1.2 94354 1j55A 95 14.24 a.39.1.2 77078 2j9wA 102 14.84 1qnxA 209 15.06 d.111.1.1 40914 2eqoA 140 15.89 2d8qA 70 16.58 g.85.1.1 131335 1c8cA 64 17.84 b.34.13.1 59084 1smbA 154 18.11 d.111.1.1 105756 1tyhA 248 18.35 a.132.1.3 107458 2o4dA 165 19.81 a.152.1.3 138907 1azpA 66 20.47 b.34.13.1 37467 2b7oA 464 20.83 c.1.10.8 128047 1guuA 52 21.53 a.4.1.3 83332 2a8nA 144 21.75 c.97.1.2 126408 1js8A 394 22.03 a.86.1.1,b.112.1.1 67219,67220 1xyiA 66 22.41 1hocA 272 22.77 b.1.1.2,d.19.1.1 20815,38297 2oy9A 98 22.78 1ykhA 108 23.27 a.252.1.2 123518 1uh6A 100 23.68 d.15.1.1 99394 3ccgA 190 23.69 3beyA 96 23.74 1bnzA 64 24.11 b.34.13.1 37468 1bf4A 63 24.18 b.34.13.1 37461 1osdA 72 25.03 d.58.17.1 104022 1dxjA 242 26.00 d.2.1.1 36244 1uddA 226 26.74 a.132.1.3 107776 1wpxB 220 26.82 1qupA 222 27.15 b.1.8.1,d.58.17.1 22301,39352 1bbxC 63 27.25 b.34.13.1 37465 2g84A 197 27.36 c.97.1.2 134766 2g3kA 94 28.18 a.24.28.1 134562 1t2bA 397 28.41 2gmyA 153 28.42 a.152.1.3 135398 1a4fA 141 28.76 a.1.1.2 15394 1lw1A 177 29.64 a.152.1.1 74290 1c3gA 170 29.78 b.4.1.1,b.4.1.1 22831,22832 1mwyA 73 30.82 d.58.17.1 79616 1lqsL 157 31.00 a.26.1.3 74192 1ret 43 32.95 1gcvB 136 33.63 a.1.1.2 15589 2uvjA 408 33.65 2q01A 497 33.75 2gb4A 252 34.50 1qnrA 344 34.72 c.1.8.3 28834 1tr0A 108 34.89 d.58.4.4 107261 1f7tA 122 36.27 d.150.1.2 59667 1wkqA 164 36.42 c.97.1.2 109393 1h21A 247 36.59 a.138.1.3 76510 1cptA 428 36.69 a.104.1.1 18968 3bdzA 397 36.92 2qycA 103 37.15 1yjrA 75 37.19 2gykB 134 37.44 d.4.1.1 135857 1b08A 158 38.38 d.169.1.1,h.1.1.1 42416,45423 2ogiA 196 38.61 1hn6A 110 39.10 g.61.1.1 76721 2d3yA 219 39.46 1z3aA 168 39.88 c.97.1.2 124396 1yzbA 182 40.32 2oyoA 196 40.79 2q4xA 221 41.28 a.132.1.3 139880 1tiyA 164 41.80 c.97.1.2 107012 1znfA 25 41.99 g.37.1.1 45036 1j7yA 141 43.49 a.1.1.2 66426 1odoA 408 43.68 a.104.1.1 92783 1gcwB 135 43.83 a.1.1.2 15591 2hhlA 195 46.18 2czrA 226 46.34 1s1hN 36 47.65 i.1.1.1 105166 2ctuA 73 48.83 1rcwA 231 50.09 a.132.1.4 97299 2f2gA 221 50.62 a.132.1.3 132816 2heyR 146 52.44 g.24.1.1,g.24.1.1,g.24.1.1 136367,136368,136369 1lfkA 398 53.58 a.104.1.1 77926 1z72A 225 53.81 a.132.1.3 124583 2gcfA 73 55.49 1cqeA 580 56.95 a.93.1.2,g.3.11.1 18703,44246 1wywA 230 57.04 2fipA 115 57.28 1bde 35 58.16 2jwhA 48 59.06 1zmeC 70 59.31 g.38.1.1,h.1.3.1 45081,45514 2p5qA 170 60.29 1i49A 224 60.80 a.238.1.2 61679 2f9iB 285 60.86 1yakA 263 63.10 a.132.1.3 122833 2pfxA 191 63.81 1r89A 437 66.05 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 1ubkL 534 66.19 e.18.1.1 88422 1vf6C 72 66.40 a.194.1.1 100602 1v1dA 31 66.72 j.6.1.1 119817 1wixA 164 67.38 a.40.3.1 114683 1lba 146 68.20 1hyiA 65 68.39 g.50.1.1 61406 1llmC 88 68.55 g.37.1.1,g.37.1.1 91059,91060 2d09A 407 69.06 1a1gA 90 69.09 g.37.1.1,g.37.1.1,g.37.1.1 45010,45011,45012 1q4gA 553 70.27 a.93.1.2,g.3.11.1 95789,95790 3bomA 142 70.36 2elxA 35 71.05 2ou6A 190 72.40 1i4fA 275 73.18 b.1.1.2,d.19.1.1 61687,61688 1euvA 221 74.57 d.3.1.7 37133 1t6eX 381 75.64 b.50.1.2 106564 1rwjA 82 75.94 a.138.1.1 105114 1f6fA 199 75.98 a.26.1.1 16839 2av1A 275 77.17 b.1.1.2,d.19.1.1 127349,127350 2oeeA 117 78.14 1qgrB 27 78.37 1ajyA 71 79.80 g.38.1.1,h.1.3.1 45083,45516 2hdpA 63 80.68 1vkeA 133 81.37 a.152.1.2 108650 1bt3A 345 81.86 a.86.1.2 18507 2j9uA 96 81.92 a.24.28.1 138155 1u84A 90 82.20 a.230.1.1 113114 2axtZ 62 82.83 1a5t 334 82.91 2yrmA 43 83.14 2h8fA 143 85.19 a.1.1.2 136239 1b0aA 288 86.10 c.2.1.7,c.58.1.2 30286,33934 1e4uA 78 86.16 g.44.1.1 59231 1ttzA 87 86.48 c.47.1.1 107309 1y07A 128 86.74 1totA 52 86.87 1zu1A 127 87.52 1qnoA 344 88.37 c.1.8.3 28838 2h8fB 146 89.24 a.1.1.2 136240 1wilA 89 89.30 g.50.1.3 114676