# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oqcA 125 3.68e-15 a.24.15.1 87264 1jr8A 117 5.84e-15 a.24.15.1 67115 2nytA 190 0.8358 2dx8A 67 1.064 2q3pA 112 1.253 d.58.4.4 139798 2aj0A 71 1.606 1aqdA 192 1.661 b.1.1.2,d.19.1.1 21585,38159 1ovxA 67 2.003 g.39.1.11 93622 1ieaA 192 2.023 b.1.1.2,d.19.1.1 21631,38205 1jvrA 137 2.028 a.61.1.2 18132 2fqhA 109 2.266 3cjdA 198 2.484 1r5tA 142 2.821 c.97.1.1 104812 2eppA 66 2.992 1wn5A 130 4.137 c.97.1.1 121082 2p09A 78 4.352 1jtkA 136 4.371 c.97.1.1 71862 2ds5A 51 4.709 g.39.1.11 131681 3b8fA 142 4.763 1uwzA 136 4.954 c.97.1.1 108081 1g7eA 122 5.003 c.47.1.7 33055 1ctt 294 5.290 2fr5A 146 5.310 c.97.1.1 133965 2ahmA 88 5.335 a.8.9.1 126760 1va6A 518 5.556 d.128.1.4 113598 1wwrA 171 5.621 c.97.1.2 121366 2b3jA 159 5.652 c.97.1.2 127787 1jwwA 80 6.020 d.58.17.1 71919 2cycA 375 6.070 1p8cA 145 6.546 a.152.1.2 94354 1cc8A 73 6.567 d.58.17.1 39343 1j55A 95 6.676 a.39.1.2 77078 2z3hA 130 6.755 2dktA 143 8.040 1cpzA 68 8.237 d.58.17.1 39351 1fngA 192 8.470 b.1.1.2,d.19.1.1 59904,59905 1uaqA 158 8.652 c.97.1.2 88386 1uw1A 80 8.667 k.42.1.1 100069 1p6oA 161 9.023 c.97.1.2 94185 1oywA 523 9.947 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1cttA 294 9.947 c.97.1.1,c.97.1.1 36022,36023 2qycA 103 10.40 1rp4A 389 10.57 a.227.1.1 105027 2oy9A 98 10.85 2o4dA 165 11.95 a.152.1.3 138907 1lw1A 177 12.13 a.152.1.1 74290 2hvwA 184 12.17 1zgwA 139 13.55 3beyA 96 14.21 1ydxA 406 15.21 d.287.1.2,d.287.1.2 123004,123005 1tr0A 108 16.58 d.58.4.4 107261 2b7oA 464 16.64 c.1.10.8 128047 1brvA 32 16.81 j.33.1.1 46235 1u8bA 133 16.93 2nx8A 179 17.10 1vq2A 193 17.33 c.97.1.2 114004 1c8cA 64 18.13 b.34.13.1 59084 2j9wA 102 18.14 2g3kA 94 18.70 a.24.28.1 134562 2d8qA 70 18.72 g.85.1.1 131335 1a6aA 176 19.38 b.1.1.2,d.19.1.1 21615,38189 1mwyA 73 19.41 d.58.17.1 79616 1xyiA 66 21.13 1bnzA 64 21.15 b.34.13.1 37468 2gmyA 153 21.25 a.152.1.3 135398 1bf4A 63 21.26 b.34.13.1 37461 1azpA 66 21.48 b.34.13.1 37467 1osdA 72 21.90 d.58.17.1 104022 3ccgA 190 21.93 2ajjA 28 23.18 1gcvB 136 23.38 a.1.1.2 15589 1bbxC 63 24.08 b.34.13.1 37465 1lqsL 157 24.15 a.26.1.3 74192 2eqoA 140 25.12 2a8nA 144 25.15 c.97.1.2 126408 1h2aL 567 25.38 e.18.1.1 43299 1qnxA 209 26.06 d.111.1.1 40914 1gcwB 135 27.27 a.1.1.2 15591 1ykhA 108 27.64 a.252.1.2 123518 2gykB 134 27.74 d.4.1.1 135857 1smbA 154 28.37 d.111.1.1 105756 1tyhA 248 28.58 a.132.1.3 107458 2czrA 226 28.64 1uddA 226 28.77 a.132.1.3 107776 1ldjB 90 29.35 g.44.1.1 73850 2q4xA 221 30.17 a.132.1.3 139880 1hocA 272 31.19 b.1.1.2,d.19.1.1 20815,38297 1js8A 394 31.22 a.86.1.1,b.112.1.1 67219,67220 1ret 43 31.41 1odoA 408 31.88 a.104.1.1 92783 2q01A 497 32.56 1yjrA 75 32.71 1wkqA 164 33.56 c.97.1.2 109393 3bw8A 217 33.72 1vkeA 133 34.79 a.152.1.2 108650 1a4fA 141 36.08 a.1.1.2 15394 2oyoA 196 36.14 1tiyA 164 37.61 c.97.1.2 107012 2h8fB 146 38.25 a.1.1.2 136240 1wywA 230 39.74 1cg5B 141 40.04 a.1.1.2 15585 1cptA 428 40.32 a.104.1.1 18968 2q0tA 263 42.27 1guuA 52 42.37 a.4.1.3 83332 1b08A 158 42.74 d.169.1.1,h.1.1.1 42416,45423 1z3aA 168 43.45 c.97.1.2 124396 2hdpA 63 43.71 1t2bA 397 44.86 1gxqA 106 46.16 a.4.6.1 70721 1uh6A 100 46.44 d.15.1.1 99394 1zoqC 47 46.75 a.153.1.1 125453 2f2gA 221 47.60 a.132.1.3 132816 2g84A 197 48.08 c.97.1.2 134766 1v4xB 146 48.53 a.1.1.2 108364 3bdzA 397 48.55 2j9uA 96 49.27 a.24.28.1 138155 1znfA 25 49.34 g.37.1.1 45036 2uvjA 408 49.41 1qupA 222 49.86 b.1.8.1,d.58.17.1 22301,39352 2fipA 115 50.07 1f7tA 122 51.42 d.150.1.2 59667 1c3gA 170 51.56 b.4.1.1,b.4.1.1 22831,22832 1qnrA 344 52.81 c.1.8.3 28834 1b0aA 288 54.07 c.2.1.7,c.58.1.2 30286,33934 2p5qA 170 54.55 1dxjA 242 54.67 d.2.1.1 36244 2pfxA 191 56.09 1s1hN 36 56.88 i.1.1.1 105166 2elxA 35 58.48 1totA 52 60.54 2ogiA 196 60.79 1zu1A 127 60.95 1e4uA 78 63.24 g.44.1.1 59231 2i5nC 336 64.91 a.138.1.2 137063 1gu9A 177 65.27 a.152.1.1 65540 1wpxB 220 67.17 1u84A 90 67.72 a.230.1.1 113114 1j7yA 141 70.21 a.1.1.2 66426 1vf6C 72 70.66 a.194.1.1 100602 1fe0A 68 71.11 d.58.17.1 39345 1i49A 224 71.45 a.238.1.2 61679 1a5t 334 73.60 2cjsC 62 74.54 2oq2A 261 75.04 2gcfA 73 75.18 3bomA 142 76.74 2d09A 407 77.06 1euvA 221 77.36 d.3.1.7 37133 2heyR 146 77.47 g.24.1.1,g.24.1.1,g.24.1.1 136367,136368,136369 2jwhA 48 77.79 2oeeA 117 79.91 1rcwA 231 79.93 a.132.1.4 97299 2ctuA 73 80.23 1yakA 263 80.42 a.132.1.3 122833 1bt3A 345 80.59 a.86.1.2 18507 1xl3C 92 81.04 a.243.1.1 122104 1bde 35 81.08 2ijcA 145 82.29 a.152.1.3 137465 1vd4A 62 83.21 g.41.3.1 113613 1t6eX 381 83.55 b.50.1.2 106564 1vdfA 46 83.65 h.1.7.1 45580 1i4fA 275 84.11 b.1.1.2,d.19.1.1 61687,61688 1maiA 131 85.21 b.55.1.1 26951 1r89A 437 86.19 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 1gvdA 52 87.27 a.4.1.3 83338 1vphA 149 87.72 d.273.1.1 113955 1pdgA 109 88.29 g.17.1.1 44748 2gb4A 252 88.29 2goyA 275 88.37 2p57A 144 88.82