# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1oqcA	125	4.28e-16	a.24.15.1	87264
1jr8A	117	7.68e-16	a.24.15.1	67115
2fqhA	109	1.798		
1yqdA	366	4.832		
1lluA	342	5.272	b.35.1.2,c.2.1.1	91064,91065
1g7eA	122	6.077	c.47.1.7	33055
2aj0A	71	7.096		
2nytA	190	7.380		
2cf5A	357	8.367		
2hcyA	347	10.83		
2o4dA	165	12.80	a.152.1.3	138907
1r5tA	142	17.91	c.97.1.1	104812
1jtkA	136	23.60	c.97.1.1	71862
2gmyA	153	25.84	a.152.1.3	135398
1xiuA	230	29.19		
1uwzA	136	29.97	c.97.1.1	108081
1zgwA	139	30.28		
2d74B	148	31.63		
1uufA	369	32.53	b.35.1.2,c.2.1.1	100006,100007
3c2uA	538	33.17		
2gpuA	230	33.84	a.123.1.1	135493
1lw1A	177	35.25	a.152.1.1	74290
1uaqA	158	36.49	c.97.1.2	88386
2ijcA	145	39.55	a.152.1.3	137465
1oywA	523	40.82	a.4.5.43,c.37.1.19,c.37.1.19	93760,93761,93762
1g2nA	264	41.95	a.123.1.1	60227
1ret	43	44.00		
1xi7A	61	45.37	g.3.6.5	115348
1wn5A	130	50.39	c.97.1.1	121082
2czrA	226	51.60		
3cjdA	198	52.15		
2z3hA	130	53.55		
2fr5A	146	54.19	c.97.1.1	133965
1jwwA	80	56.29	d.58.17.1	71919
2e2rA	244	56.64		
2cklB	165	62.90		
1k4wA	252	64.38	a.123.1.1	72068
1cpzA	68	66.36	d.58.17.1	39351
2d8qA	70	66.82	g.85.1.1	131335
1cc8A	73	66.89	d.58.17.1	39343
3b8xA	390	67.10		
2hvwA	184	68.72		
1vq2A	193	70.34	c.97.1.2	114004
1f8fA	371	71.27	b.35.1.2,c.2.1.1	83246,83247
2b3jA	159	71.72	c.97.1.2	127787
1dkfA	233	74.03	a.123.1.1	19280
2g3kA	94	74.82	a.24.28.1	134562
2e7xA	150	75.22		
1mwyA	73	75.35	d.58.17.1	79616
2cycA	375	75.69		
1p6oA	161	79.36	c.97.1.2	94185
1a22A	180	79.47	a.26.1.1	16833
2j9uA	96	80.31	a.24.28.1	138155
3b8fA	142	82.26		
2b5wA	357	85.16		
2g58A	121	87.33	a.133.1.2	134645
2ahmA	88	88.29	a.8.9.1	126760
1qupA	222	89.95	b.1.8.1,d.58.17.1	22301,39352