# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1oqcA	125	1.72e-16	a.24.15.1	87264
1jr8A	117	4.96e-16	a.24.15.1	67115
2q3pA	112	0.4347	d.58.4.4	139798
2aj0A	71	1.965		
2qycA	103	3.079		
1tr0A	108	4.618	d.58.4.4	107261
2fqhA	109	5.263		
2dx8A	67	7.257		
1aqdA	192	7.402	b.1.1.2,d.19.1.1	21585,38159
1r5tA	142	9.874	c.97.1.1	104812
2gmyA	153	12.31	a.152.1.3	135398
2nytA	190	12.43		
3b8fA	142	12.65		
2eppA	66	12.92		
1jwwA	80	14.08	d.58.17.1	71919
1g7eA	122	14.61	c.47.1.7	33055
2cycA	375	15.41		
2o4dA	165	15.68	a.152.1.3	138907
2i0kA	561	16.47		
1cpzA	68	16.67	d.58.17.1	39351
1ieaA	192	17.68	b.1.1.2,d.19.1.1	21631,38205
1wn5A	130	17.71	c.97.1.1	121082
1mwyA	73	18.99	d.58.17.1	79616
1cc8A	73	20.96	d.58.17.1	39343
1uwzA	136	21.38	c.97.1.1	108081
1ovxA	67	21.85	g.39.1.11	93622
1ldjB	90	23.23	g.44.1.1	73850
1jtkA	136	25.62	c.97.1.1	71862
2z3hA	130	25.96		
1i49A	224	27.40	a.238.1.2	61679
1a22A	180	29.43	a.26.1.1	16833
1fngA	192	30.66	b.1.1.2,d.19.1.1	59904,59905
1pdgA	109	32.38	g.17.1.1	44748
1u8bA	133	37.86		
3cjdA	198	43.21		
1axiA	191	43.45	a.26.1.1	16832
2ahmA	88	44.47	a.8.9.1	126760
2p09A	78	45.40		
1s62A	106	46.10	d.212.1.1	118874
2ds5A	51	46.46	g.39.1.11	131681
2fr5A	146	46.89	c.97.1.1	133965
1zgwA	139	47.02		
1vppV	102	47.57	g.17.1.1	44753
2e7xA	150	47.65		
1qupA	222	48.46	b.1.8.1,d.58.17.1	22301,39352
1a6dA	545	51.40	a.129.1.2,c.8.5.2,d.56.1.2	19488,30819,38936
1y2tA	142	51.79	b.97.1.2	116407
1a6aA	176	52.00	b.1.1.2,d.19.1.1	21615,38189
1ret	43	53.45		
2gcfA	73	55.47		
3b55A	451	55.62		
1wq8A	110	57.02	g.17.1.1	114832
2oy9A	98	57.07		
1oywA	523	57.73	a.4.5.43,c.37.1.19,c.37.1.19	93760,93761,93762
2hvwA	184	57.78		
3beyA	96	59.77		
1fltV	98	60.45	g.17.1.1	44751
1yjrA	75	63.47		
1dmhA	311	64.34	b.3.6.1	22633
1f6fA	199	65.80	a.26.1.1	16839
3b8xA	390	66.35		
1osdA	72	67.76	d.58.17.1	104022
2elxA	35	68.40		
1c3gA	170	68.64	b.4.1.1,b.4.1.1	22831,22832
2vjxA	846	69.73		
1huwA	191	71.94	a.26.1.1	16831
2yrmA	43	72.00		
1p6oA	161	72.09	c.97.1.2	94185
1uaqA	158	73.13	c.97.1.2	88386
1hocA	272	74.32	b.1.1.2,d.19.1.1	20815,38297
1lw1A	177	75.56	a.152.1.1	74290
2je8A	848	75.81		
1brvA	32	77.24	j.33.1.1	46235
1zu1A	127	79.41		
2ijcA	145	80.51	a.152.1.3	137465
1ctt	294	82.27		
1fe0A	68	83.25	d.58.17.1	39345
2evvA	207	85.72		
1jvrA	137	86.35	a.61.1.2	18132
1vq2A	193	89.12	c.97.1.2	114004