# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oqcA 125 3.46e-18 a.24.15.1 87264 1jr8A 117 1.58e-17 a.24.15.1 67115 1g59A 468 2.371 a.97.1.1,c.26.1.1 60257,60258 1y7qA 98 2.887 a.28.3.2 122714 1fs7A 485 3.410 a.138.1.3 19691 2h5nA 133 3.497 1qdbA 473 4.600 a.138.1.3 19688 1kk8B 139 5.415 a.39.1.5 77430 1tv9A 335 6.204 a.60.6.1,a.60.12.1,d.218.1.2 112675,112676,112677 2e7pA 116 7.583 1y2kA 349 8.191 a.211.1.2 122571 1wdcC 156 9.372 a.39.1.5 17317 1lv2A 229 10.28 a.123.1.1 78230 2hzfA 114 13.05 1zgyA 272 14.93 a.123.1.1 125064 1eudB 396 15.83 c.23.4.1,d.142.1.4 31150,41571 1gln 468 17.89 1tbbA 332 19.43 a.211.1.2 106741 2czlA 272 23.36 c.94.1.1 131055 2exrA 524 23.65 1y0vH 146 25.78 2pocA 367 26.59 2nq2C 253 26.69 2riqA 160 27.12 1j09A 468 29.93 a.97.1.1,c.26.1.1 77025,77026 2hc9A 491 29.99 2bl0C 142 29.99 1lamA 484 30.21 c.50.1.1,c.56.5.3 33166,33829 2q22A 139 30.33 1so2A 420 31.99 a.211.1.2 98936 1q7sA 117 34.04 c.131.1.1 96055 1b4aA 149 34.54 a.4.5.3,d.74.2.1 16088,39721 3bnjA 485 36.29 2flsA 132 37.60 1wdcB 156 39.13 a.39.1.5 17302 2q4kA 251 39.34 d.86.1.2 139864 2pv2A 103 39.79 2o5gA 148 41.37 2lbd 267 41.82 2bl0B 145 42.58 1pq9A 253 43.85 a.123.1.1 95004 2gv5A 161 44.04 1x52A 124 44.04 2p54A 267 45.15 a.123.1.1 139497 1ne9A 335 46.36 d.108.1.4,d.108.1.4 91839,91840 2db0A 253 46.59 1uz3A 102 47.56 2o38A 120 47.62 1s4qA 228 48.07 c.37.1.1 98507 1ysjA 404 48.18 c.56.5.4,d.58.19.1 123975,123976 1udxA 416 49.24 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 2rjiA 84 49.32 1znwA 207 49.64 c.37.1.1 125412 2pjoA 268 50.61 1wtyA 119 50.64 a.24.16.2 114880 1pxwA 128 50.64 d.79.3.1 95305 2q3pA 112 50.73 d.58.4.4 139798 1mvwC 147 51.29 i.15.1.1 79525 2jacA 110 51.39 2fp4B 395 51.57 c.23.4.1,d.142.1.4 133897,133898 1tyyA 339 52.00 c.72.1.1 112850 1t6nA 220 53.02 c.37.1.19 106576 1kp8A 547 53.05 a.129.1.1,c.8.5.1,d.56.1.1 84414,84415,84416 1lam 484 54.09 2nugA 221 54.16 2q4wA 524 55.01 1k4wA 252 55.61 a.123.1.1 72068 2qbuA 232 55.94 1f0jA 377 56.94 a.211.1.2 19346 1qgxA 357 57.23 e.7.1.1 42973 1h8aC 128 57.91 a.4.1.3,a.4.1.3 65731,65732 1mmsA 140 58.45 a.4.7.1,d.47.1.1 16247,38766 2od5A 116 58.83 1a0p 290 59.17 2a6cA 83 59.48 a.35.1.13 126236 1ggzA 148 59.67 a.39.1.5 70176 2oqoA 200 62.32 1dkfA 233 62.95 a.123.1.1 19280 1qvaA 223 63.00 c.37.1.19 32411 1k66A 149 63.80 c.23.1.1 90941 1xovA 326 64.31 b.34.11.4,c.56.5.6 122206,122207 2eb0A 307 64.34 2qacA 146 64.40 1pzlA 237 64.94 a.123.1.1 104393 2f3yA 148 65.21 1s9rA 410 65.63 d.126.1.4 98758 1bllE 488 65.95 c.50.1.1,c.56.5.3 33170,33833 1l3lA 234 66.16 a.4.6.2,d.110.5.1 73541,73542 1tbfA 347 66.59 a.211.1.2 106743 2ez6A 221 69.13 a.149.1.1,d.50.1.1 132616,132617 2nu8B 388 71.23 1moq 368 72.01 1rztA 331 72.48 a.60.6.1,a.60.12.1,d.218.1.2 98224,98225,98226 1hbzA 498 72.70 e.5.1.1 60937 2dznB 82 72.87 2b6cA 220 73.17 a.118.1.17 127983 2d2mA 140 74.17 1y0zA 330 74.46 b.82.2.8 116317 2gykA 86 77.35 1oxxK 353 77.41 b.40.6.3,c.37.1.12 93715,93716 1umqA 81 77.54 a.4.1.12 99625 1hdsA 141 77.93 a.1.1.2 15378 1a0pA 290 78.08 a.60.9.1,d.163.1.1 18105,42165 2qneA 495 79.05 1a6f 119 79.79 1gajA 257 80.91 c.37.1.12 60416 2a19B 284 81.14 1uujA 88 81.87 a.221.1.1 108046 2ie4A 589 82.26 a.118.1.2 137291 1buqA 125 82.81 d.17.4.3 38111 1gg3A 279 83.91 a.11.2.1,b.55.1.5,d.15.1.4 16372,27007,37615 2b43A 526 84.45 1oxsC 353 85.73 b.40.6.3,c.37.1.12 87519,87520 1y4hA 188 86.96 d.3.1.1 122615 1od2A 805 87.05 c.14.1.4,c.14.1.4 86821,86822 2f2aB 483 88.07 a.182.1.2,d.128.1.5 132802,132803 1y14A 187 89.13 a.60.8.2 116322 3bwgA 239 89.74 1ka1A 357 89.86 e.7.1.1 68369