Best Alignments for T0396

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1oqcA	3.9051e-21	1oqcA/T0396-1oqcA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.24.15.1
1jr8A	1.1776e-20	1jr8A/T0396-1jr8A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.24.15.1
2nytA	1.9765e+00	2nytA/T0396-2nytA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1ctt	5.7941e+00	1ctt/T0396-1ctt-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2aj0A	6.6201e+00	2aj0A/T0396-2aj0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1cc8A	8.4520e+00	1cc8A/T0396-1cc8A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.58.17.1
2z3hA	9.7099e+00	2z3hA/T0396-2z3hA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1wkqA	9.9568e+00	1wkqA/T0396-1wkqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.2
1cttA	1.4046e+01	1cttA/T0396-1cttA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.1 c.97.1.1
3b8fA	1.4346e+01	3b8fA/T0396-3b8fA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1wn5A	1.4483e+01	1wn5A/T0396-1wn5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.1
2ds5A	1.5189e+01	2ds5A/T0396-2ds5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.39.1.11
2ahmA	1.8160e+01	2ahmA/T0396-2ahmA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.8.9.1
2fqhA	1.8449e+01	2fqhA/T0396-2fqhA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2q3pA	1.8763e+01	2q3pA/T0396-2q3pA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.58.4.4
1nowA	1.8919e+01	1nowA/T0396-1nowA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.1.8.6 d.92.2.1
1ovxA	1.9730e+01	1ovxA/T0396-1ovxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.39.1.11
2qycA	2.0375e+01	2qycA/T0396-2qycA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2a8nA	2.5254e+01	2a8nA/T0396-2a8nA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.2
2hvwA	2.5282e+01	2hvwA/T0396-2hvwA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001