# TARGET T0396 # Using neural net dunbrack-40pc-3157-t06-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0396.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 114.473 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 G 0.001 0.027 0.689 0.002 0.005 0.014 0.001 0.001 0.012 0.192 0.030 0.015 0.012 2 S 0.001 0.016 0.818 0.002 0.007 0.016 0.001 0.001 0.009 0.094 0.015 0.006 0.015 3 M 0.001 0.011 0.146 0.004 0.221 0.356 0.001 0.001 0.010 0.063 0.164 0.003 0.019 4 L 0.001 0.010 0.102 0.005 0.367 0.247 0.001 0.001 0.008 0.046 0.195 0.011 0.006 5 H 0.002 0.016 0.149 0.002 0.266 0.302 0.001 0.001 0.013 0.076 0.135 0.011 0.026 6 W 0.002 0.042 0.224 0.003 0.051 0.319 0.001 0.001 0.010 0.154 0.161 0.010 0.023 7 G 0.001 0.014 0.469 0.001 0.009 0.281 0.001 0.001 0.002 0.164 0.045 0.007 0.006 8 P 0.001 0.003 0.054 0.001 0.016 0.873 0.001 0.001 0.001 0.020 0.030 0.001 0.002 9 K 0.001 0.001 0.004 0.001 0.010 0.973 0.001 0.001 0.001 0.002 0.010 0.001 0.001 10 Y 0.001 0.001 0.001 0.001 0.005 0.992 0.001 0.001 0.001 0.001 0.002 0.001 0.001 11 W 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 12 R 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 13 S 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 14 L 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 15 H 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 16 L 0.001 0.001 0.001 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.004 0.001 0.001 17 Y 0.001 0.001 0.001 0.001 0.001 0.990 0.001 0.001 0.001 0.001 0.006 0.001 0.001 18 A 0.002 0.001 0.001 0.001 0.004 0.967 0.001 0.001 0.001 0.002 0.022 0.001 0.001 19 I 0.006 0.001 0.009 0.001 0.009 0.861 0.001 0.001 0.001 0.009 0.095 0.006 0.003 20 F 0.015 0.006 0.057 0.003 0.022 0.626 0.001 0.001 0.003 0.059 0.173 0.006 0.028 21 F 0.004 0.009 0.497 0.002 0.008 0.113 0.001 0.001 0.010 0.196 0.097 0.043 0.019 22 S 0.001 0.008 0.467 0.002 0.015 0.027 0.001 0.001 0.006 0.154 0.289 0.008 0.021 23 D 0.001 0.011 0.351 0.001 0.016 0.015 0.001 0.001 0.004 0.331 0.262 0.005 0.004 24 A 0.001 0.012 0.532 0.001 0.013 0.014 0.001 0.001 0.004 0.321 0.097 0.003 0.004 25 P 0.001 0.036 0.524 0.001 0.031 0.024 0.001 0.001 0.005 0.254 0.112 0.004 0.008 26 S 0.001 0.024 0.704 0.001 0.027 0.034 0.001 0.001 0.004 0.164 0.034 0.004 0.005 27 W 0.001 0.006 0.057 0.001 0.076 0.752 0.001 0.001 0.001 0.034 0.070 0.001 0.002 28 K 0.001 0.006 0.036 0.001 0.052 0.783 0.001 0.001 0.001 0.014 0.105 0.001 0.001 29 E 0.001 0.002 0.037 0.001 0.033 0.899 0.001 0.001 0.001 0.009 0.015 0.001 0.003 30 K 0.001 0.001 0.007 0.001 0.004 0.984 0.001 0.001 0.001 0.002 0.003 0.001 0.001 31 Y 0.001 0.001 0.001 0.001 0.002 0.993 0.001 0.001 0.001 0.001 0.003 0.001 0.001 32 E 0.001 0.001 0.001 0.001 0.002 0.994 0.001 0.001 0.001 0.001 0.002 0.001 0.001 33 A 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 34 I 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 35 Q 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 36 W 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 37 I 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 38 L 0.001 0.001 0.001 0.001 0.002 0.993 0.001 0.001 0.001 0.001 0.004 0.001 0.001 39 N 0.001 0.001 0.001 0.001 0.003 0.980 0.001 0.001 0.001 0.001 0.015 0.001 0.001 40 F 0.001 0.001 0.001 0.001 0.003 0.979 0.001 0.001 0.001 0.001 0.015 0.001 0.001 41 I 0.001 0.001 0.004 0.001 0.005 0.948 0.001 0.001 0.001 0.003 0.037 0.001 0.001 42 E 0.001 0.001 0.007 0.001 0.009 0.880 0.001 0.001 0.001 0.007 0.092 0.003 0.001 43 S 0.001 0.002 0.017 0.001 0.015 0.828 0.001 0.001 0.001 0.026 0.103 0.001 0.005 44 L 0.001 0.008 0.273 0.001 0.004 0.182 0.001 0.001 0.017 0.355 0.115 0.040 0.003 45 P 0.001 0.018 0.629 0.001 0.007 0.058 0.001 0.001 0.015 0.130 0.095 0.002 0.045 46 C 0.001 0.013 0.568 0.002 0.024 0.206 0.001 0.001 0.006 0.123 0.049 0.005 0.004 47 T 0.001 0.002 0.069 0.001 0.070 0.742 0.001 0.001 0.002 0.035 0.076 0.001 0.002 48 R 0.001 0.003 0.027 0.001 0.093 0.797 0.001 0.001 0.001 0.015 0.061 0.001 0.002 49 C 0.001 0.003 0.034 0.001 0.073 0.852 0.001 0.001 0.001 0.012 0.021 0.001 0.003 50 Q 0.001 0.001 0.007 0.001 0.030 0.945 0.001 0.001 0.001 0.004 0.012 0.001 0.001 51 H 0.001 0.001 0.002 0.001 0.016 0.955 0.001 0.001 0.001 0.002 0.024 0.001 0.001 52 H 0.001 0.001 0.004 0.001 0.010 0.966 0.001 0.001 0.001 0.003 0.016 0.001 0.001 53 A 0.001 0.001 0.002 0.001 0.005 0.990 0.001 0.001 0.001 0.001 0.001 0.001 0.001 54 F 0.001 0.001 0.001 0.001 0.007 0.990 0.001 0.001 0.001 0.001 0.002 0.001 0.001 55 S 0.001 0.001 0.001 0.001 0.017 0.972 0.001 0.001 0.001 0.001 0.010 0.001 0.001 56 Y 0.001 0.001 0.001 0.001 0.007 0.968 0.001 0.001 0.001 0.001 0.023 0.001 0.001 57 L 0.001 0.001 0.003 0.001 0.006 0.940 0.001 0.001 0.001 0.002 0.048 0.001 0.001 58 T 0.001 0.001 0.020 0.001 0.021 0.803 0.001 0.001 0.001 0.008 0.143 0.002 0.001 59 K 0.001 0.005 0.054 0.002 0.039 0.579 0.001 0.001 0.002 0.072 0.233 0.002 0.012 60 N 0.001 0.004 0.393 0.002 0.006 0.053 0.001 0.001 0.006 0.378 0.143 0.010 0.004 61 P 0.001 0.005 0.605 0.003 0.019 0.025 0.001 0.001 0.015 0.093 0.219 0.003 0.011 62 L 0.002 0.016 0.535 0.004 0.041 0.036 0.001 0.003 0.038 0.132 0.165 0.016 0.011 63 T 0.005 0.024 0.452 0.003 0.054 0.048 0.004 0.007 0.121 0.151 0.068 0.023 0.038 64 L 0.005 0.061 0.521 0.003 0.040 0.031 0.003 0.004 0.086 0.104 0.063 0.018 0.061 65 N 0.001 0.037 0.463 0.005 0.010 0.008 0.001 0.002 0.032 0.295 0.083 0.046 0.018 66 N 0.001 0.021 0.526 0.001 0.008 0.016 0.001 0.001 0.006 0.324 0.066 0.004 0.027 67 S 0.001 0.009 0.165 0.002 0.047 0.472 0.001 0.001 0.001 0.141 0.157 0.003 0.003 68 E 0.001 0.003 0.024 0.001 0.074 0.770 0.001 0.001 0.001 0.022 0.103 0.001 0.001 69 D 0.001 0.002 0.032 0.001 0.054 0.858 0.001 0.001 0.001 0.014 0.031 0.001 0.004 70 F 0.002 0.001 0.024 0.001 0.024 0.928 0.001 0.001 0.001 0.006 0.007 0.002 0.004 71 Q 0.003 0.001 0.004 0.001 0.012 0.964 0.001 0.001 0.001 0.002 0.008 0.001 0.003 72 Y 0.004 0.001 0.001 0.001 0.009 0.970 0.001 0.001 0.001 0.001 0.009 0.001 0.002 73 W 0.004 0.001 0.001 0.001 0.004 0.982 0.001 0.001 0.001 0.001 0.005 0.001 0.002 74 T 0.004 0.001 0.001 0.001 0.003 0.982 0.001 0.001 0.001 0.001 0.004 0.001 0.002 75 F 0.003 0.001 0.001 0.001 0.003 0.981 0.001 0.001 0.001 0.001 0.007 0.001 0.002 76 A 0.001 0.001 0.002 0.001 0.003 0.974 0.001 0.001 0.001 0.002 0.015 0.001 0.001 77 F 0.001 0.001 0.005 0.001 0.004 0.951 0.001 0.001 0.001 0.006 0.031 0.001 0.002 78 H 0.001 0.001 0.014 0.001 0.010 0.919 0.001 0.001 0.001 0.012 0.038 0.001 0.002 79 N 0.001 0.001 0.013 0.001 0.020 0.907 0.001 0.001 0.001 0.017 0.038 0.001 0.002 80 N 0.001 0.001 0.010 0.001 0.021 0.922 0.001 0.001 0.001 0.009 0.033 0.001 0.001 81 V 0.001 0.001 0.011 0.001 0.025 0.907 0.001 0.001 0.001 0.012 0.038 0.001 0.003 82 N 0.001 0.002 0.038 0.002 0.047 0.826 0.001 0.001 0.001 0.021 0.054 0.002 0.005 83 N 0.002 0.004 0.054 0.002 0.060 0.753 0.001 0.001 0.001 0.025 0.090 0.005 0.004 84 R 0.001 0.004 0.055 0.002 0.040 0.700 0.001 0.001 0.001 0.030 0.158 0.002 0.005 85 L 0.001 0.004 0.082 0.002 0.051 0.487 0.001 0.001 0.001 0.068 0.296 0.003 0.004 86 N 0.001 0.005 0.261 0.005 0.033 0.124 0.001 0.001 0.004 0.152 0.404 0.004 0.008 87 K 0.002 0.010 0.688 0.004 0.023 0.046 0.001 0.001 0.010 0.138 0.037 0.029 0.013 88 K 0.002 0.015 0.552 0.002 0.027 0.046 0.002 0.001 0.042 0.123 0.122 0.010 0.056 89 I 0.003 0.060 0.568 0.003 0.030 0.039 0.002 0.001 0.064 0.089 0.096 0.023 0.022 90 I 0.001 0.045 0.733 0.002 0.006 0.011 0.001 0.001 0.082 0.067 0.004 0.017 0.029 91 S 0.001 0.008 0.883 0.002 0.003 0.008 0.001 0.001 0.018 0.049 0.003 0.007 0.018 92 W 0.001 0.005 0.093 0.005 0.123 0.610 0.001 0.001 0.009 0.041 0.105 0.002 0.007 93 S 0.001 0.003 0.037 0.004 0.174 0.627 0.001 0.001 0.003 0.019 0.127 0.003 0.002 94 E 0.001 0.003 0.065 0.001 0.125 0.729 0.001 0.001 0.007 0.019 0.028 0.008 0.011 95 Y 0.003 0.006 0.089 0.002 0.044 0.776 0.001 0.001 0.008 0.012 0.023 0.003 0.033 96 K 0.008 0.007 0.059 0.011 0.078 0.716 0.001 0.001 0.004 0.017 0.055 0.037 0.009 97 N 0.010 0.008 0.051 0.004 0.093 0.630 0.001 0.001 0.006 0.020 0.094 0.009 0.073 98 I 0.008 0.011 0.114 0.007 0.050 0.601 0.001 0.001 0.005 0.044 0.112 0.016 0.030 99 Y 0.005 0.010 0.286 0.006 0.036 0.379 0.001 0.001 0.006 0.073 0.139 0.029 0.029 100 E 0.003 0.009 0.364 0.006 0.045 0.268 0.001 0.001 0.005 0.093 0.156 0.018 0.032 101 Q 0.001 0.006 0.190 0.005 0.073 0.247 0.001 0.001 0.003 0.129 0.326 0.009 0.010 102 S 0.001 0.007 0.210 0.003 0.082 0.169 0.001 0.001 0.004 0.122 0.386 0.006 0.009 103 I 0.002 0.028 0.437 0.002 0.071 0.094 0.001 0.001 0.012 0.132 0.183 0.014 0.023 104 L 0.002 0.052 0.588 0.003 0.021 0.034 0.001 0.001 0.018 0.174 0.060 0.017 0.029 105 K 0.001 0.017 0.788 0.002 0.008 0.013 0.001 0.001 0.009 0.117 0.020 0.010 0.015