# List of top-scoring protein chains for T0396.t06-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1oqcA	125	3.18e-12	a.24.15.1	87264
2hj3A	125	1.62e-11		
1jr8A	117	6.71e-11	a.24.15.1	67115
2fqhA	109	32.67		
2d30A	141	45.07	c.97.1.1	131190
2owaA	138	55.53		
2elvA	36	60.22		
1dgjA	907	61.42	a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1	17909,37694,38585,41415
1cc8A	73	63.48	d.58.17.1	39343
1c7nA	399	66.69	c.67.1.3	34413
2cshA	110	67.55	g.37.1.1,g.37.1.1	130769,130770
2fb6A	117	67.94		
1pyoB	105	78.49		
2p2cB	106	78.75		
2eptA	41	87.61