# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1oqcA	125	6.73e-20	a.24.15.1	87264
1jr8A	117	2.12e-19	a.24.15.1	67115
2nytA	190	1.118		
2aj0A	71	2.424		
1ctt	294	2.607		
1cc8A	73	4.914	d.58.17.1	39343
1wkqA	164	5.102	c.97.1.2	109393
1nowA	507	5.498	c.1.8.6,d.92.2.1	85936,85937
2ahmA	88	8.119	a.8.9.1	126760
2q3pA	112	8.240	d.58.4.4	139798
1cttA	294	9.065	c.97.1.1,c.97.1.1	36022,36023
2z3hA	130	10.46		
1wn5A	130	11.75	c.97.1.1	121082
2qycA	103	12.38		
1rp4A	389	12.73	a.227.1.1	105027
2vlgA	111	13.78		
2fqhA	109	14.99		
2c5sA	413	15.78	c.26.2.6,d.308.1.1	129950,129951
1ovxA	67	15.91	g.39.1.11	93622
2q01A	497	16.56		
2ds5A	51	16.63	g.39.1.11	131681
3b8fA	142	17.00		
1rc9A	221	18.58	d.111.1.1,g.19.1.2	111765,111766
2eppA	66	19.25		
1wlzA	105	19.74	a.39.1.7	121024
2h21A	440	19.90	a.166.1.1,b.85.7.3	135976,135977
1a99A	344	20.21	c.94.1.1	35812
2f2lX	167	20.49	d.118.1.1	132844
2hvwA	184	20.98		
1r5tA	142	24.19	c.97.1.1	104812
2px0A	296	24.64		
2p09A	78	25.42		
2fr5A	146	25.67	c.97.1.1	133965
1uwzA	136	26.55	c.97.1.1	108081
2yrmA	43	27.81		
1sk4A	163	28.38	d.118.1.1	105664
1vq2A	193	28.85	c.97.1.2	114004
2oy9A	98	29.55		
2d58A	107	30.06		
1c8cA	64	30.15	b.34.13.1	59084
1j55A	95	30.53	a.39.1.2	77078
2i3sB	36	32.14		
1rwjA	82	32.35	a.138.1.1	105114
1xyiA	66	33.90		
1tr0A	108	34.02	d.58.4.4	107261
1osdA	72	36.08	d.58.17.1	104022
1dxsA	80	39.10	a.60.1.2	17944
1ryaA	160	40.23	d.113.1.5	105122
1uw1A	80	44.40	k.42.1.1	100069
1xtaA	221	46.54		
3bjuA	521	47.83		
1wy9A	147	48.63		
1pjcA	361	49.91	c.2.1.4,c.23.12.2	30101,31361
2jwhA	48	51.32		
1qnxA	209	53.01	d.111.1.1	40914
2elxA	35	55.00		
2nx8A	179	55.75		
2ezhA	75	58.20	a.4.1.2	16029
1fe0A	68	59.35	d.58.17.1	39345
2iazA	113	59.35		
2pnkA	428	59.41		
1kz7A	353	60.65	a.87.1.1,b.55.1.1	73333,73334
1yckA	175	61.33	d.118.1.1	122968
1v1dA	31	61.70	j.6.1.1	119817
1jvrA	137	61.71	a.61.1.2	18132
1z3aA	168	61.87	c.97.1.2	124396
2a8nA	144	62.09	c.97.1.2	126408
1z5yE	149	66.36	c.47.1.10	124498
1kv4A	42	66.61	j.4.1.3	73051
1smbA	154	67.21	d.111.1.1	105756
2b3jA	159	68.41	c.97.1.2	127787
1wrdA	103	70.99		
3canA	182	72.09		
1njqA	39	72.27	g.37.1.3	85822
1px5A	349	75.12	a.160.1.2,d.218.1.6	95277,95278
1gyxA	76	77.73	d.80.1.1	76387
2pg9A	337	79.87		
2nllB	103	81.22	g.39.1.2	45115
2pqxA	245	81.45		
1ohtA	215	81.93	d.118.1.1	87036
2jacA	110	84.00		
1up9A	107	84.18	a.138.1.1	113390
1faoA	126	84.33	b.55.1.1	26974
2axtZ	62	84.49		
1wilA	89	85.55	g.50.1.3	114676
1le6A	123	87.35	a.133.1.2	73862
2g2bA	150	87.57		
2pd2A	108	88.91		
2hpvA	208	89.42