# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oqcA 125 2.35e-21 a.24.15.1 87264 1jr8A 117 8.38e-21 a.24.15.1 67115 2nytA 190 1.217 1ctt 294 1.683 2aj0A 71 4.074 1cc8A 73 4.140 d.58.17.1 39343 2ahmA 88 5.576 a.8.9.1 126760 1wkqA 164 7.504 c.97.1.2 109393 1nowA 507 7.553 c.1.8.6,d.92.2.1 85936,85937 1cttA 294 7.709 c.97.1.1,c.97.1.1 36022,36023 1wlzA 105 7.801 a.39.1.7 121024 1wn5A 130 8.065 c.97.1.1 121082 2z3hA 130 9.312 2ds5A 51 9.411 g.39.1.11 131681 1jvrA 137 10.12 a.61.1.2 18132 1ovxA 67 10.16 g.39.1.11 93622 1rc9A 221 11.02 d.111.1.1,g.19.1.2 111765,111766 2qycA 103 11.44 2hvwA 184 11.85 1a99A 344 12.82 c.94.1.1 35812 3b8fA 142 12.93 2q3pA 112 13.40 d.58.4.4 139798 2h21A 440 17.10 a.166.1.1,b.85.7.3 135976,135977 1sk4A 163 17.85 d.118.1.1 105664 2f2lX 167 18.20 d.118.1.1 132844 2q01A 497 18.21 1c8cA 64 18.65 b.34.13.1 59084 1z3aA 168 19.21 c.97.1.2 124396 2px0A 296 19.23 1vq2A 193 19.91 c.97.1.2 114004 2a8nA 144 21.30 c.97.1.2 126408 2g84A 197 22.54 c.97.1.2 134766 2fr5A 146 22.98 c.97.1.1 133965 2vlgA 111 25.75 1xtaA 221 25.97 2i3sB 36 26.17 1uwzA 136 26.35 c.97.1.1 108081 2c5sA 413 26.87 c.26.2.6,d.308.1.1 129950,129951 2eppA 66 27.69 2b3jA 159 27.75 c.97.1.2 127787 1r5tA 142 27.96 c.97.1.1 104812 2p09A 78 28.18 1wwrA 171 28.89 c.97.1.2 121366 2oy9A 98 28.90 1rp4A 389 29.78 a.227.1.1 105027 1j55A 95 31.22 a.39.1.2 77078 2nx8A 179 31.52 1brvA 32 31.59 j.33.1.1 46235 1z5yE 149 32.48 c.47.1.10 124498 1xyiA 66 32.51 3bjuA 521 33.18 2pqxA 245 33.46 1qqeA 292 33.50 a.118.8.1 19210 2fqhA 109 34.84 1dxsA 80 36.12 a.60.1.2 17944 1wy9A 147 36.53 2g2bA 150 38.12 1smbA 154 38.84 d.111.1.1 105756 2ie4A 589 38.85 a.118.1.2 137291 2dx8A 67 39.54 1qnxA 209 42.96 d.111.1.1 40914 2pt2A 334 43.45 2iazA 113 43.57 2pnkA 428 44.33 2pd2A 108 46.00 1kv4A 42 46.01 j.4.1.3 73051 2hi7B 176 49.61 1tr0A 108 50.97 d.58.4.4 107261 2axtZ 62 51.26 2g3kA 94 54.01 a.24.28.1 134562 1v1dA 31 55.19 j.6.1.1 119817 2jwhA 48 56.35 1sw2A 275 56.79 c.94.1.1 106064 1n28A 124 57.49 a.133.1.2 91550 1ohtA 215 59.26 d.118.1.1 87036 2q1fA 1022 59.29 1lu4A 136 60.39 c.47.1.10 91124 1ryaA 160 60.52 d.113.1.5 105122 2d58A 107 60.91 1hw1A 239 62.07 a.4.5.6,a.78.1.1 16111,18441 1ykhA 108 62.27 a.252.1.2 123518 2pu9A 110 63.39 2rieA 160 65.73 1rwjA 82 67.99 a.138.1.1 105114 2yrmA 43 69.85 1uw1A 80 71.06 k.42.1.1 100069 1le6A 123 73.20 a.133.1.2 73862 1kz7A 353 73.43 a.87.1.1,b.55.1.1 73333,73334 1pjcA 361 74.48 c.2.1.4,c.23.12.2 30101,31361 1fe0A 68 74.75 d.58.17.1 39345 2ezhA 75 75.16 a.4.1.2 16029 1u53A 196 75.55 1yckA 175 75.71 d.118.1.1 122968 1osdA 72 75.93 d.58.17.1 104022 1kngA 156 77.19 c.47.1.10 72777 1px5A 349 77.65 a.160.1.2,d.218.1.6 95277,95278 1sw5B 275 78.12 c.94.1.1 106070 1dm9A 133 78.28 d.66.1.3 39560 2pg9A 337 80.08 2c9eA 327 80.81 1faoA 126 81.89 b.55.1.1 26974 1sw5A 275 83.31 c.94.1.1 106069 1dj7A 117 84.36 g.36.1.1 44997 1wrdA 103 85.39 2j9uA 96 85.58 a.24.28.1 138155 1zc6A 305 87.78 c.55.1.5,c.55.1.5 124888,124889 3canA 182 88.13 2fipA 115 88.59