# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oqcA 125 7.98e-22 a.24.15.1 87264 1jr8A 117 1.90e-21 a.24.15.1 67115 2nytA 190 1.038 1ctt 294 1.209 1cc8A 73 1.588 d.58.17.1 39343 1ovxA 67 2.883 g.39.1.11 93622 1wn5A 130 2.888 c.97.1.1 121082 2ds5A 51 2.891 g.39.1.11 131681 1c8cA 64 2.961 b.34.13.1 59084 2aj0A 71 3.016 2z3hA 130 3.296 1nowA 507 3.808 c.1.8.6,d.92.2.1 85936,85937 1cttA 294 3.976 c.97.1.1,c.97.1.1 36022,36023 1wkqA 164 4.968 c.97.1.2 109393 1xyiA 66 6.209 2qycA 103 7.115 2g84A 197 8.142 c.97.1.2 134766 1jvrA 137 9.383 a.61.1.2 18132 2ezhA 75 9.870 a.4.1.2 16029 3b8fA 142 10.05 1v32A 101 10.11 a.42.1.1 100277 2pd2A 108 12.23 2a8nA 144 12.47 c.97.1.2 126408 2q01A 497 12.66 1dxsA 80 12.86 a.60.1.2 17944 2q3pA 112 13.26 d.58.4.4 139798 2f2lX 167 15.96 d.118.1.1 132844 1rc9A 221 16.20 d.111.1.1,g.19.1.2 111765,111766 2eppA 66 16.26 1z3aA 168 16.78 c.97.1.2 124396 2fr5A 146 16.80 c.97.1.1 133965 1wwrA 171 17.05 c.97.1.2 121366 2nx8A 179 17.34 1r5tA 142 17.43 c.97.1.1 104812 2h21A 440 17.44 a.166.1.1,b.85.7.3 135976,135977 2p09A 78 17.49 2b3jA 159 18.96 c.97.1.2 127787 1uwzA 136 19.40 c.97.1.1 108081 2c5sA 413 20.37 c.26.2.6,d.308.1.1 129950,129951 2px0A 296 22.06 1fe0A 68 23.05 d.58.17.1 39345 2dx8A 67 23.48 2hvwA 184 23.72 2vlgA 111 24.41 1uw1A 80 24.93 k.42.1.1 100069 2yrmA 43 25.07 1v1dA 31 26.12 j.6.1.1 119817 1qqeA 292 28.83 a.118.8.1 19210 1vq2A 193 29.96 c.97.1.2 114004 2axiA 115 30.27 a.42.1.1 127494 5palA 109 31.68 a.39.1.4 17215 1xtaA 221 35.63 2ahmA 88 37.74 a.8.9.1 126760 1sk4A 163 37.75 d.118.1.1 105664 2oy9A 98 37.89 1tr0A 108 38.05 d.58.4.4 107261 1osdA 72 38.46 d.58.17.1 104022 1a99A 344 40.00 c.94.1.1 35812 1rwjA 82 40.08 a.138.1.1 105114 2qh7A 76 41.24 2gmyA 153 45.78 a.152.1.3 135398 1dq3A 454 46.14 b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 2jwhA 48 46.30 2eqoA 140 47.08 1wlzA 105 47.72 a.39.1.7 121024 3bjuA 521 47.78 1rwyA 109 47.84 a.39.1.4 98002 1n28A 124 51.88 a.133.1.2 91550 2ie4A 589 52.27 a.118.1.2 137291 2i10A 202 52.68 a.4.1.9,a.121.1.1 136960,136961 1njqA 39 52.68 g.37.1.3 85822 1rp4A 389 52.73 a.227.1.1 105027 1ohtA 215 54.22 d.118.1.1 87036 2pu9A 110 55.09 1le6A 123 57.43 a.133.1.2 73862 2hl7A 84 58.84 1dm9A 133 59.21 d.66.1.3 39560 2i13A 190 60.38 k.12.1.1 136964 1nnfA 309 61.39 c.94.1.1 85903 1smbA 154 61.44 d.111.1.1 105756 2gloA 59 62.15 1yjrA 75 62.38 1ta8A 332 62.57 d.142.2.2 112375 1z5yE 149 63.75 c.47.1.10 124498 1yckA 175 63.93 d.118.1.1 122968 1ryaA 160 65.71 d.113.1.5 105122 2r7hA 177 69.21 2pqxA 245 71.68 2hoqA 241 73.69 1j0pA 108 74.75 a.138.1.1 90743 1lu4A 136 75.05 c.47.1.10 91124 1hw1A 239 75.46 a.4.5.6,a.78.1.1 16111,18441 2dsyA 87 75.47 1twfL 70 75.65 g.41.9.2 112737 1va6A 518 76.19 d.128.1.4 113598 2d28C 149 76.54 2rieA 160 77.44 1xngA 268 77.50 c.26.2.1 122186 1iioA 84 78.62 a.39.4.1 66150 1sw2A 275 78.86 c.94.1.1 106064 2eaxA 164 78.93 2ctuA 73 79.27 1gu9A 177 79.40 a.152.1.1 65540 2czrA 226 80.87 3c9hA 355 81.20 1c0pA 363 81.25 c.4.1.2,d.16.1.3 30647,37934 1a1iA 90 82.87 g.37.1.1,g.37.1.1,g.37.1.1 44998,44999,45000 1a1gA 90 83.37 g.37.1.1,g.37.1.1,g.37.1.1 45010,45011,45012 1pjcA 361 86.25 c.2.1.4,c.23.12.2 30101,31361 3cp0A 82 86.29