# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oqcA 125 2.16e-19 a.24.15.1 87264 1jr8A 117 5.98e-19 a.24.15.1 67115 2nytA 190 2.021 1ctt 294 2.429 2aj0A 71 4.249 1wkqA 164 5.920 c.97.1.2 109393 1cc8A 73 6.240 d.58.17.1 39343 2q3pA 112 7.359 d.58.4.4 139798 1nowA 507 8.306 c.1.8.6,d.92.2.1 85936,85937 2qycA 103 8.459 2ahmA 88 8.554 a.8.9.1 126760 1ovxA 67 10.15 g.39.1.11 93622 2ds5A 51 10.62 g.39.1.11 131681 1cttA 294 11.51 c.97.1.1,c.97.1.1 36022,36023 2z3hA 130 12.18 2hvwA 184 13.22 1wlzA 105 14.11 a.39.1.7 121024 2a8nA 144 14.78 c.97.1.2 126408 2vlgA 111 14.92 2i3sB 36 17.38 3b8fA 142 17.83 1wn5A 130 18.27 c.97.1.1 121082 2fqhA 109 19.76 1c8cA 64 20.63 b.34.13.1 59084 2nx8A 179 21.44 2g84A 197 22.08 c.97.1.2 134766 3beyA 96 24.38 1rp4A 389 25.51 a.227.1.1 105027 1xyiA 66 25.74 2q01A 497 27.01 2eppA 66 27.54 2h21A 440 28.17 a.166.1.1,b.85.7.3 135976,135977 1vq2A 193 28.98 c.97.1.2 114004 2fr5A 146 29.76 c.97.1.1 133965 2d58A 107 30.65 1z3aA 168 32.20 c.97.1.2 124396 2axtZ 62 32.56 2opoA 86 33.09 a.39.1.10 139209 2prrA 197 33.56 1wwrA 171 34.64 c.97.1.2 121366 1j55A 95 35.85 a.39.1.2 77078 2b3jA 159 36.22 c.97.1.2 127787 1wy9A 147 37.23 3bjuA 521 38.70 2pnkA 428 39.27 1osdA 72 39.44 d.58.17.1 104022 1q0eA 152 41.04 b.1.8.1 95504 1pcxA 810 41.38 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 94497,94498,94499,94500,94501 1v1dA 31 42.44 j.6.1.1 119817 1uwzA 136 42.47 c.97.1.1 108081 2ezhA 75 42.80 a.4.1.2 16029 2jwhA 48 44.70 2f2lX 167 44.87 d.118.1.1 132844 2c5sA 413 45.27 c.26.2.6,d.308.1.1 129950,129951 2pfxA 191 47.05 2g2bA 150 48.76 1rc9A 221 52.48 d.111.1.1,g.19.1.2 111765,111766 2qeuA 141 52.79 2iazA 113 53.72 2oyoA 196 56.66 1njqA 39 58.36 g.37.1.3 85822 2elxA 35 60.84 2p09A 78 61.17 1vavA 222 62.12 b.29.1.18 108472 2pd2A 108 63.28 1rroA 108 64.54 a.39.1.4 17195 3c1lA 188 65.92 1z5yE 149 67.34 c.47.1.10 124498 1fe0A 68 68.31 d.58.17.1 39345 1r5tA 142 68.33 c.97.1.1 104812 1rwyA 109 68.68 a.39.1.4 98002 1hw1A 239 69.41 a.4.5.6,a.78.1.1 16111,18441 5palA 109 71.03 a.39.1.4 17215 1xfiA 367 71.05 e.50.1.1 109584 1avsA 90 71.93 a.39.1.5 17226 1le6A 123 72.64 a.133.1.2 73862 2r7hA 177 72.86 2ilkA 160 73.42 a.26.1.3 16885 2yrmA 43 73.95 1a99A 344 73.98 c.94.1.1 35812 2px0A 296 77.57 1qnxA 209 79.04 d.111.1.1 40914 2oy9A 98 79.11 1pjcA 361 82.19 c.2.1.4,c.23.12.2 30101,31361 1tr0A 108 83.40 d.58.4.4 107261 1uw1A 80 85.54 k.42.1.1 100069 2ijcA 145 86.65 a.152.1.3 137465 2g3kA 94 87.60 a.24.28.1 134562 1znfA 25 88.49 g.37.1.1 45036