# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1oqcA	125	1.87e-19	a.24.15.1	87264
1jr8A	117	4.70e-19	a.24.15.1	67115
1ctt	294	2.878		
2nytA	190	2.889		
1cc8A	73	7.782	d.58.17.1	39343
1wkqA	164	8.161	c.97.1.2	109393
2aj0A	71	8.285		
2q3pA	112	8.865	d.58.4.4	139798
2qycA	103	9.263		
1cttA	294	12.45	c.97.1.1,c.97.1.1	36022,36023
2ahmA	88	14.04	a.8.9.1	126760
1ovxA	67	15.06	g.39.1.11	93622
1nowA	507	15.15	c.1.8.6,d.92.2.1	85936,85937
2ds5A	51	16.12	g.39.1.11	131681
2vlgA	111	16.78		
1wlzA	105	17.24	a.39.1.7	121024
2fqhA	109	19.40		
2z3hA	130	20.15		
2i3sB	36	20.69		
2hvwA	184	22.81		
1c8cA	64	23.51	b.34.13.1	59084
3b8fA	142	24.35		
2a8nA	144	25.74	c.97.1.2	126408
1xyiA	66	28.14		
1wn5A	130	31.47	c.97.1.1	121082
2axtZ	62	31.65		
2d58A	107	32.40		
1q0eA	152	33.67	b.1.8.1	95504
2h21A	440	36.16	a.166.1.1,b.85.7.3	135976,135977
3beyA	96	36.46		
1j55A	95	37.03	a.39.1.2	77078
2opoA	86	37.31	a.39.1.10	139209
1vavA	222	37.38	b.29.1.18	108472
2eppA	66	37.92		
2q01A	497	38.85		
1pcxA	810	40.38	a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1	94497,94498,94499,94500,94501
1wy9A	147	40.77		
2fr5A	146	41.67	c.97.1.1	133965
2g84A	197	41.82	c.97.1.2	134766
1rp4A	389	43.39	a.227.1.1	105027
1vq2A	193	45.56	c.97.1.2	114004
2g2bA	150	45.59		
2nx8A	179	45.61		
1v1dA	31	45.70	j.6.1.1	119817
2prrA	197	46.15		
2f2lX	167	47.88	d.118.1.1	132844
2jwhA	48	52.60		
1xfiA	367	56.14	e.50.1.1	109584
2c5sA	413	57.05	c.26.2.6,d.308.1.1	129950,129951
2pfxA	191	57.10		
2qeuA	141	57.40		
1osdA	72	58.20	d.58.17.1	104022
1uwzA	136	60.34	c.97.1.1	108081
2ezhA	75	63.34	a.4.1.2	16029
2yrmA	43	64.63		
1z3aA	168	64.65	c.97.1.2	124396
2oyoA	196	66.56		
1avsA	90	67.47	a.39.1.5	17226
3bjuA	521	67.79		
1zc6A	305	68.23	c.55.1.5,c.55.1.5	124888,124889
1rwyA	109	68.99	a.39.1.4	98002
1pjcA	361	70.11	c.2.1.4,c.23.12.2	30101,31361
2pnkA	428	71.47		
2elxA	35	71.50		
2b3jA	159	71.52	c.97.1.2	127787
2p09A	78	72.15		
1a99A	344	72.60	c.94.1.1	35812
1tuvA	114	72.89	d.58.4.11	112665
1njqA	39	76.81	g.37.1.3	85822
2r7hA	177	77.18		
1r5tA	142	78.69	c.97.1.1	104812
1wwrA	171	79.00	c.97.1.2	121366
3c1lA	188	81.44		
1yewA	382	84.61		
1dxsA	80	88.97	a.60.1.2	17944
1z5yE	149	89.25	c.47.1.10	124498
1rroA	108	89.92	a.39.1.4	17195