# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oqcA 125 4.01e-20 a.24.15.1 87264 1jr8A 117 1.15e-19 a.24.15.1 67115 1ctt 294 1.284 2nytA 190 2.103 1wkqA 164 4.994 c.97.1.2 109393 1cttA 294 5.628 c.97.1.1,c.97.1.1 36022,36023 2aj0A 71 6.472 2ahmA 88 6.900 a.8.9.1 126760 2q3pA 112 7.187 d.58.4.4 139798 1cc8A 73 7.932 d.58.17.1 39343 2hvwA 184 8.396 2fqhA 109 9.516 2qycA 103 9.518 1ovxA 67 11.91 g.39.1.11 93622 2ds5A 51 12.81 g.39.1.11 131681 2z3hA 130 14.10 1nowA 507 14.21 c.1.8.6,d.92.2.1 85936,85937 3b8fA 142 14.64 2a8nA 144 14.83 c.97.1.2 126408 1vq2A 193 15.74 c.97.1.2 114004 1wlzA 105 15.90 a.39.1.7 121024 1wwrA 171 17.41 c.97.1.2 121366 1wn5A 130 19.27 c.97.1.1 121082 2vlgA 111 20.47 1z3aA 168 20.74 c.97.1.2 124396 2nx8A 179 23.03 2eppA 66 24.16 1vavA 222 24.24 b.29.1.18 108472 2q01A 497 24.50 2g84A 197 24.88 c.97.1.2 134766 2i3sB 36 25.47 1pcxA 810 25.89 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 94497,94498,94499,94500,94501 1c8cA 64 26.19 b.34.13.1 59084 2fr5A 146 26.78 c.97.1.1 133965 2yrmA 43 30.66 2axtZ 62 31.47 2b3jA 159 31.68 c.97.1.2 127787 2pnkA 428 33.40 1xyiA 66 34.78 3beyA 96 35.65 1q0eA 152 36.17 b.1.8.1 95504 2p09A 78 37.25 1uwzA 136 38.77 c.97.1.1 108081 2h21A 440 40.52 a.166.1.1,b.85.7.3 135976,135977 1v1dA 31 40.77 j.6.1.1 119817 2prrA 197 41.64 2jwhA 48 42.42 1rp4A 389 43.00 a.227.1.1 105027 2pfxA 191 44.83 1njqA 39 44.89 g.37.1.3 85822 2f2lX 167 44.93 d.118.1.1 132844 1osdA 72 48.04 d.58.17.1 104022 2iazA 113 49.57 2d58A 107 50.79 2qeuA 141 53.10 1xfiA 367 53.79 e.50.1.1 109584 1j55A 95 54.43 a.39.1.2 77078 2opoA 86 56.34 a.39.1.10 139209 2oyoA 196 56.81 1uw1A 80 60.03 k.42.1.1 100069 2px0A 296 60.13 2elxA 35 60.21 1dxsA 80 60.40 a.60.1.2 17944 1r5tA 142 60.46 c.97.1.1 104812 1k9uA 78 62.45 a.39.1.10 84348 3c1lA 188 63.51 2yusA 79 64.97 1zc6A 305 64.98 c.55.1.5,c.55.1.5 124888,124889 2pd2A 108 65.79 1rc9A 221 67.66 d.111.1.1,g.19.1.2 111765,111766 1avsA 90 68.24 a.39.1.5 17226 3bjuA 521 68.37 1pjcA 361 68.67 c.2.1.4,c.23.12.2 30101,31361 2c5sA 413 71.87 c.26.2.6,d.308.1.1 129950,129951 1wy9A 147 72.43 1le6A 123 72.56 a.133.1.2 73862 1a99A 344 74.63 c.94.1.1 35812 1qnxA 209 75.86 d.111.1.1 40914 1rwjA 82 77.17 a.138.1.1 105114 1z5yE 149 78.80 c.47.1.10 124498 2g2bA 150 83.49 1tr0A 108 84.91 d.58.4.4 107261 1m1qA 91 85.62 a.138.1.3 74419 1ykhA 108 86.60 a.252.1.2 123518 2oy9A 98 87.61 1znfA 25 88.50 g.37.1.1 45036