# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1oqcA	125	1.92e-20	a.24.15.1	87264
1jr8A	117	4.31e-20	a.24.15.1	67115
2nytA	190	2.404		
2aj0A	71	3.692		
2z3hA	130	4.956		
2q3pA	112	5.196	d.58.4.4	139798
2qycA	103	8.249		
1cc8A	73	8.631	d.58.17.1	39343
1vq2A	193	9.072	c.97.1.2	114004
1p6oA	161	9.127	c.97.1.2	94185
2b3jA	159	10.20	c.97.1.2	127787
1wn5A	130	10.28	c.97.1.1	121082
2g84A	197	11.60	c.97.1.2	134766
1ctt	294	11.92		
1z3aA	168	12.31	c.97.1.2	124396
2nllB	103	12.34	g.39.1.2	45115
2nx8A	179	12.97		
1tr0A	108	17.35	d.58.4.4	107261
1wkqA	164	17.54	c.97.1.2	109393
2hvwA	184	18.09		
1wwrA	171	18.14	c.97.1.2	121366
1r5tA	142	19.01	c.97.1.1	104812
2dsyA	87	19.99		
1iioA	84	20.03	a.39.4.1	66150
1knyA	253	20.42	a.24.16.1,d.218.1.1	75896,75897
2fr5A	146	21.15	c.97.1.1	133965
1uwzA	136	21.98	c.97.1.1	108081
2ezhA	75	23.48	a.4.1.2	16029
2uuuA	584	25.52		
2ie4A	589	27.10	a.118.1.2	137291
1gu9A	177	28.22	a.152.1.1	65540
2a8nA	144	28.47	c.97.1.2	126408
1dszB	85	28.55	g.39.1.2	45108
2ahmA	88	28.56	a.8.9.1	126760
1v32A	101	29.75	a.42.1.1	100277
3b8fA	142	30.15		
1dszA	86	31.19	g.39.1.2	45129
2gcfA	73	34.66		
1rp4A	389	36.25	a.227.1.1	105027
1osdA	72	37.33	d.58.17.1	104022
1prxA	224	37.79	c.47.1.10	33076
1lw1A	177	39.62	a.152.1.1	74290
3bjuA	521	39.93		
2hanB	119	40.01	g.39.1.2	136292
2is9A	204	42.43		
1cttA	294	43.16	c.97.1.1,c.97.1.1	36022,36023
2vlgA	111	43.59		
2c7aA	78	45.44		
1faoA	126	45.80	b.55.1.1	26974
2px0A	296	50.19		
1c8cA	64	52.54	b.34.13.1	59084
1nowA	507	54.05	c.1.8.6,d.92.2.1	85936,85937
1n8jA	186	56.10	c.47.1.10	85401
1pu6A	218	59.09	a.96.1.5	95123
1upqA	123	59.99	b.55.1.1	113392
1vavA	222	64.58	b.29.1.18	108472
2nn4A	72	71.66		
3canA	182	73.08		
1rwjA	82	73.87	a.138.1.1	105114
1nwwA	149	77.07	d.17.4.8	86306
1y2tA	142	79.55	b.97.1.2	116407
1pjcA	361	81.49	c.2.1.4,c.23.12.2	30101,31361
2i75A	320	83.56		
1xyiA	66	86.25		
1v4pA	157	86.27	d.67.1.2	113533
2i1yA	301	86.55		
2fp4B	395	88.06	c.23.4.1,d.142.1.4	133897,133898
2v2gA	233	89.72