# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oqcA 125 2.44e-19 a.24.15.1 87264 1jr8A 117 7.31e-19 a.24.15.1 67115 2nytA 190 1.058 1ctt 294 1.240 2aj0A 71 2.666 1cc8A 73 4.587 d.58.17.1 39343 2ds5A 51 4.681 g.39.1.11 131681 1nowA 507 4.859 c.1.8.6,d.92.2.1 85936,85937 1wkqA 164 5.465 c.97.1.2 109393 2ahmA 88 6.508 a.8.9.1 126760 1cttA 294 6.572 c.97.1.1,c.97.1.1 36022,36023 2fqhA 109 6.720 1ovxA 67 7.015 g.39.1.11 93622 2z3hA 130 7.271 1wn5A 130 8.118 c.97.1.1 121082 2f2lX 167 9.350 d.118.1.1 132844 2a8nA 144 10.09 c.97.1.2 126408 1wwrA 171 10.77 c.97.1.2 121366 2b3jA 159 10.88 c.97.1.2 127787 2q01A 497 11.27 3b8fA 142 11.44 1z3aA 168 11.92 c.97.1.2 124396 2eppA 66 12.10 1c8cA 64 12.69 b.34.13.1 59084 2hvwA 184 12.72 2nx8A 179 13.02 1wlzA 105 13.16 a.39.1.7 121024 2q3pA 112 13.34 d.58.4.4 139798 2p09A 78 14.02 1rc9A 221 17.09 d.111.1.1,g.19.1.2 111765,111766 2vlgA 111 17.19 2yrmA 43 17.56 2g84A 197 18.79 c.97.1.2 134766 2fr5A 146 19.38 c.97.1.1 133965 1xyiA 66 19.58 2qycA 103 20.07 2i3sB 36 21.29 2iazA 113 21.94 1uwzA 136 22.19 c.97.1.1 108081 1r5tA 142 23.06 c.97.1.1 104812 1njqA 39 23.89 g.37.1.3 85822 2h21A 440 24.20 a.166.1.1,b.85.7.3 135976,135977 2oy9A 98 26.03 2ezhA 75 26.13 a.4.1.2 16029 2c5sA 413 26.26 c.26.2.6,d.308.1.1 129950,129951 1uw1A 80 26.54 k.42.1.1 100069 1le6A 123 28.45 a.133.1.2 73862 1rp4A 389 28.82 a.227.1.1 105027 1znfA 25 29.52 g.37.1.1 45036 1a99A 344 30.21 c.94.1.1 35812 2elxA 35 30.67 1kz7A 353 31.06 a.87.1.1,b.55.1.1 73333,73334 2q1fA 1022 31.59 1xtaA 221 32.38 1vq2A 193 33.48 c.97.1.2 114004 1rwjA 82 33.67 a.138.1.1 105114 2dx8A 67 34.53 1smbA 154 35.32 d.111.1.1 105756 2jwhA 48 35.66 1brvA 32 36.16 j.33.1.1 46235 1ohtA 215 39.96 d.118.1.1 87036 3bjuA 521 40.42 1xfiA 367 40.48 e.50.1.1 109584 2eaxA 164 41.18 1osdA 72 45.92 d.58.17.1 104022 1qnxA 209 45.98 d.111.1.1 40914 2yusA 79 48.64 2g3kA 94 48.97 a.24.28.1 134562 1ryaA 160 49.51 d.113.1.5 105122 1q0eA 152 49.54 b.1.8.1 95504 1ykhA 108 49.96 a.252.1.2 123518 1jvrA 137 50.45 a.61.1.2 18132 2pt2A 334 50.98 2rieA 160 51.02 1v1dA 31 51.80 j.6.1.1 119817 1u53A 196 53.03 1dq3A 454 53.39 b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1wilA 89 54.36 g.50.1.3 114676 1wrdA 103 55.64 3canA 182 60.43 1sk4A 163 60.51 d.118.1.1 105664 2fipA 115 61.08 1sxrA 183 61.84 d.118.1.1 106101 2jrpA 81 62.25 1ae7A 119 62.59 a.133.1.2 19553 2dsyA 87 63.31 1faoA 126 64.91 b.55.1.1 26974 2c9eA 327 65.27 2eloA 37 65.48 2px0A 296 65.71 1va6A 518 66.09 d.128.1.4 113598 2axtZ 62 66.24 1tr0A 108 67.53 d.58.4.4 107261 1yckA 175 68.66 d.118.1.1 122968 1ei7A 158 71.57 a.24.5.1 16584 1nnfA 309 72.87 c.94.1.1 85903 1gyxA 76 73.80 d.80.1.1 76387 2g2bA 150 74.64 1hbnC 248 76.03 d.58.31.1 60902 2d58A 107 76.74 2dmiA 115 77.98 1csnA 298 78.01 d.144.1.7 41664 1sw2A 275 78.36 c.94.1.1 106064 1wy9A 147 79.92 4tmkA 213 80.61 c.37.1.1 31930 1vf6C 72 81.89 a.194.1.1 100602 2gmyA 153 82.33 a.152.1.3 135398 2j9uA 96 82.76 a.24.28.1 138155 1ki1B 352 83.03 a.87.1.1,b.55.1.1 72497,72498 1y4tA 322 84.99 c.94.1.1 116464 2j9wA 102 87.00 2pu9A 110 87.26 2pg9A 337 89.82