# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oqcA 125 3.80e-28 a.24.15.1 87264 1jr8A 117 2.76e-27 a.24.15.1 67115 1rroA 108 0.5240 a.39.1.4 17195 1ctt 294 1.068 1ew2A 513 1.381 c.76.1.1 59525 2fqhA 109 1.596 2in1A 175 2.049 d.20.1.4 137521 2nytA 190 2.457 1ubkL 534 2.647 e.18.1.1 88422 1k9uA 78 2.697 a.39.1.10 84348 2a8nA 144 2.759 c.97.1.2 126408 1avsA 90 4.434 a.39.1.5 17226 1nowA 507 4.584 c.1.8.6,d.92.2.1 85936,85937 2aj0A 71 4.741 1cc8A 73 5.886 d.58.17.1 39343 2hvwA 184 6.147 1neeA 138 7.782 d.241.1.1,g.59.1.1 91841,91842 2c9eA 327 7.848 1dnpA 471 8.040 a.99.1.1,c.28.1.1 18775,31630 2uuuA 584 8.797 1q0eA 152 8.998 b.1.8.1 95504 1uasA 362 9.086 b.71.1.1,c.1.8.1 88388,88389 2ahmA 88 9.241 a.8.9.1 126760 1zowA 313 11.79 1cttA 294 13.19 c.97.1.1,c.97.1.1 36022,36023 2z3hA 130 13.20 2q2gA 180 13.37 2goyA 275 13.44 2jamA 304 14.39 2ds5A 51 14.56 g.39.1.11 131681 1wkqA 164 14.83 c.97.1.2 109393 1q25A 432 15.07 b.64.1.1,b.64.1.1,b.64.1.1 104493,104494,104495 2pnkA 428 15.20 1qtwA 285 15.63 c.1.15.1 29392 2prrA 197 16.10 5eau 548 17.14 1ovxA 67 17.41 g.39.1.11 93622 1ciyA 590 17.71 b.18.1.3,b.77.2.1,f.1.3.1 23720,27977,43392 1d8wA 426 17.87 c.1.15.2 29394 2eppA 66 19.32 2j89A 261 19.38 2nx8A 179 19.38 3c9hA 355 21.58 1abbA 828 22.17 c.87.1.4 35536 1extA 162 22.57 g.24.1.1,g.24.1.1,g.24.1.1 44900,44901,44902 1j55A 95 23.19 a.39.1.2 77078 1pjcA 361 23.84 c.2.1.4,c.23.12.2 30101,31361 1z3aA 168 23.95 c.97.1.2 124396 2d40A 354 25.01 2d58A 107 25.35 4tmkA 213 25.51 c.37.1.1 31930 2vlgA 111 26.95 1b0aA 288 28.97 c.2.1.7,c.58.1.2 30286,33934 1zbpA 273 29.78 e.61.1.1 124861 2p09A 78 30.16 2puzA 419 31.93 1g0dA 695 32.47 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 60166,60167,60168,60169 2qycA 103 32.57 1g99A 408 32.73 c.55.1.2,c.55.1.2 33457,33458 2jerA 389 33.09 2yrmA 43 33.73 1e9pA 151 33.87 b.1.8.1 22215 5eauA 548 34.63 a.102.4.1,a.128.1.3 18851,19443 1a0iA 348 34.94 b.40.4.6,d.142.2.1 25363,41577 1rc9A 221 36.38 d.111.1.1,g.19.1.2 111765,111766 2g3vA 208 36.42 1vnsA 609 39.19 a.111.1.3 19061 1esoA 154 39.53 b.1.8.1 22293 1i4dA 224 40.25 a.238.1.2 61682 1h5uA 842 41.11 c.87.1.4 60655 2pkeA 251 41.34 3b8fA 142 42.16 2g84A 197 44.73 c.97.1.2 134766 1f1gA 154 45.17 b.1.8.1 76153 2jdxA 385 46.48 d.126.1.2 41139 1k4iA 233 46.78 d.115.1.2 72056 1ox0A 430 47.29 c.95.1.1,c.95.1.1 87495,87496 2f2lX 167 47.39 d.118.1.1 132844 1uw1A 80 48.08 k.42.1.1 100069 2v7kA 361 48.99 2dmiA 115 49.79 1eexG 173 50.14 a.23.2.1 16490 1n3lA 372 50.30 c.26.1.1 79966 1njqA 39 50.55 g.37.1.3 85822 1rt8A 513 51.13 a.40.1.1 105095 1mucA 373 51.51 c.1.11.2,d.54.1.1 29236,38880 1zzmA 259 51.74 c.1.9.12 125911 2iazA 113 52.73 1y5iA 1246 54.53 b.52.2.2,c.81.1.1 122639,122640 1o3uA 135 54.67 a.24.16.3 86615 2i3sB 36 54.82 2oy9A 98 54.90 1y23A 145 55.65 d.13.1.1 116394 2cx4A 164 55.89 c.47.1.10 130973 1xsoA 150 56.51 b.1.8.1 22273 2hi2A 158 56.94 2qdrA 303 57.57 1yloA 348 58.24 b.49.3.1,c.56.5.4 123659,123660 1whuA 104 58.43 a.4.9.1 114651 1t3cA 421 58.74 d.92.1.7 106343 1znfA 25 59.44 g.37.1.1 45036 3bg1B 442 60.49 2pa6A 427 61.97 1cmxA 236 62.47 d.3.1.6 37130 1rwyA 109 63.05 a.39.1.4 98002 2c2jA 211 63.33 1ve3A 227 63.57 c.66.1.43 120010 1gpuA 680 63.95 c.36.1.10,c.36.1.6,c.48.1.1 65454,65455,65456 1lu4A 136 64.92 c.47.1.10 91124 1v4pA 157 65.09 d.67.1.2 113533 1brvA 32 65.34 j.33.1.1 46235 2bg9E 370 65.68 1x3mA 415 66.68 c.55.1.2,c.55.1.2 121664,121665 1wilA 89 67.27 g.50.1.3 114676 2hnhA 910 67.82 1bquA 215 69.89 b.1.2.1,b.1.2.1 22066,22067 2eqkA 85 71.27 1t5rA 284 71.89 f.6.1.1 106465 1jvrA 137 72.20 a.61.1.2 18132 1to4A 156 72.58 b.1.8.1 107162 1mtzA 293 73.61 c.69.1.7 79467 1le6A 123 73.72 a.133.1.2 73862 1d3vA 323 74.05 c.42.1.1 32559 1vk5A 157 74.36 a.220.1.1 108635 2opjA 327 74.41 1gppA 237 75.64 b.86.1.2 76262 2vgaA 207 75.68 1uwzA 136 75.77 c.97.1.1 108081 2ezhA 75 76.43 a.4.1.2 16029 1rwjA 82 76.74 a.138.1.1 105114 2ra2A 64 76.93 1vq2A 193 77.44 c.97.1.2 114004 1a2aA 122 77.71 a.133.1.2 19540 2dfkA 402 78.08 1iznA 286 78.30 e.43.1.1 83847 1s35A 214 79.82 a.7.1.1,a.7.1.1 98420,98421 1np3A 338 81.34 a.100.1.2,c.2.1.6 85946,85947 1t7lA 766 83.86 1eovA 487 85.19 b.40.4.1,d.104.1.1 25239,40760 2oizD 135 87.07 2ffeA 311 87.65 c.143.1.1 133381 1nrfA 262 88.86 e.3.1.1 92086 2elxA 35 89.08 1vd4A 62 89.66 g.41.3.1 113613