# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oqcA 125 1.15e-18 a.24.15.1 87264 1jr8A 117 3.51e-18 a.24.15.1 67115 2nytA 190 1.452 1ctt 294 1.730 2aj0A 71 4.239 1wkqA 164 4.739 c.97.1.2 109393 2ahmA 88 4.837 a.8.9.1 126760 2fqhA 109 5.400 1nowA 507 6.213 c.1.8.6,d.92.2.1 85936,85937 2ds5A 51 7.188 g.39.1.11 131681 1cttA 294 8.367 c.97.1.1,c.97.1.1 36022,36023 2a8nA 144 8.634 c.97.1.2 126408 1cc8A 73 8.658 d.58.17.1 39343 1z3aA 168 9.166 c.97.1.2 124396 1ovxA 67 9.450 g.39.1.11 93622 2hvwA 184 9.762 1wwrA 171 9.839 c.97.1.2 121366 2b3jA 159 10.79 c.97.1.2 127787 2eppA 66 10.86 2z3hA 130 10.97 2q3pA 112 11.10 d.58.4.4 139798 2nx8A 179 11.36 1wlzA 105 11.61 a.39.1.7 121024 2q01A 497 11.69 1wn5A 130 11.84 c.97.1.1 121082 2qycA 103 12.01 2vlgA 111 13.07 2g84A 197 16.99 c.97.1.2 134766 2p09A 78 17.40 2yrmA 43 17.51 3b8fA 142 17.54 1rc9A 221 18.03 d.111.1.1,g.19.1.2 111765,111766 1njqA 39 20.81 g.37.1.3 85822 1c8cA 64 20.91 b.34.13.1 59084 2f2lX 167 21.03 d.118.1.1 132844 2iazA 113 22.98 2i3sB 36 26.65 2fr5A 146 26.82 c.97.1.1 133965 2dx8A 67 28.18 1le6A 123 29.71 a.133.1.2 73862 2oy9A 98 30.55 2c5sA 413 31.17 c.26.2.6,d.308.1.1 129950,129951 1uw1A 80 31.41 k.42.1.1 100069 1vq2A 193 32.87 c.97.1.2 114004 1znfA 25 33.01 g.37.1.1 45036 1r5tA 142 34.14 c.97.1.1 104812 1xyiA 66 34.71 1uwzA 136 34.72 c.97.1.1 108081 1brvA 32 35.83 j.33.1.1 46235 1xtaA 221 36.66 2h21A 440 37.53 a.166.1.1,b.85.7.3 135976,135977 2elxA 35 39.21 1kz7A 353 40.76 a.87.1.1,b.55.1.1 73333,73334 1tr0A 108 42.51 d.58.4.4 107261 2f4mA 295 43.73 1smbA 154 44.93 d.111.1.1 105756 2ezhA 75 45.62 a.4.1.2 16029 1ykhA 108 45.73 a.252.1.2 123518 1rwjA 82 46.39 a.138.1.1 105114 1a99A 344 47.76 c.94.1.1 35812 2jwhA 48 47.90 2g3kA 94 48.58 a.24.28.1 134562 2px0A 296 50.29 1rp4A 389 50.60 a.227.1.1 105027 3bjuA 521 50.77 1pjcA 361 50.81 c.2.1.4,c.23.12.2 30101,31361 1qnxA 209 50.81 d.111.1.1 40914 1ryaA 160 52.34 d.113.1.5 105122 1jvrA 137 53.09 a.61.1.2 18132 1wilA 89 54.00 g.50.1.3 114676 1xfiA 367 56.88 e.50.1.1 109584 1ae7A 119 58.39 a.133.1.2 19553 2pt2A 334 60.31 2q1fA 1022 61.70 2rieA 160 63.16 1q0eA 152 64.73 b.1.8.1 95504 2pd2A 108 65.62 1sw2A 275 68.44 c.94.1.1 106064 1sk4A 163 68.66 d.118.1.1 105664 2d58A 107 68.80 2jrpA 81 69.27 2pnkA 428 69.74 2fipA 115 71.50 1osdA 72 72.27 d.58.17.1 104022 1n28A 124 72.81 a.133.1.2 91550 2g2bA 150 73.50 1sg1X 161 73.75 g.24.1.1,g.24.1.1,g.24.1.1,g.24.1.1 105515,105516,105517,105518 1ohtA 215 73.94 d.118.1.1 87036 3canA 182 76.03 1v1dA 31 76.17 j.6.1.1 119817 2eaxA 164 76.54 1wy9A 147 76.58 2yusA 79 76.90 2j9uA 96 78.47 a.24.28.1 138155 1sw5A 275 78.84 c.94.1.1 106069 2pqxA 245 79.80 1tuvA 114 80.98 d.58.4.11 112665 2dmiA 115 81.84 2dsyA 87 82.23 1z5yE 149 82.87 c.47.1.10 124498 1nnfA 309 82.88 c.94.1.1 85903 2czrA 226 83.46 1dq3A 454 83.79 b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 2eloA 37 85.84 1wrdA 103 88.47 1faoA 126 89.88 b.55.1.1 26974 1f8fA 371 89.90 b.35.1.2,c.2.1.1 83246,83247