# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oqcA 125 2.69e-20 a.24.15.1 87264 1jr8A 117 7.51e-20 a.24.15.1 67115 1ctt 294 2.474 2nytA 190 3.342 1ovxA 67 5.720 g.39.1.11 93622 2ds5A 51 6.035 g.39.1.11 131681 2aj0A 71 6.363 1wkqA 164 6.453 c.97.1.2 109393 1nowA 507 7.725 c.1.8.6,d.92.2.1 85936,85937 1cc8A 73 8.290 d.58.17.1 39343 2fqhA 109 9.099 1cttA 294 10.49 c.97.1.1,c.97.1.1 36022,36023 2ahmA 88 11.04 a.8.9.1 126760 2q3pA 112 11.67 d.58.4.4 139798 3b8fA 142 12.33 1wn5A 130 13.02 c.97.1.1 121082 2z3hA 130 14.14 2qycA 103 14.17 2vlgA 111 14.24 2c5sA 413 14.63 c.26.2.6,d.308.1.1 129950,129951 2hvwA 184 15.18 1wlzA 105 16.90 a.39.1.7 121024 2a8nA 144 18.25 c.97.1.2 126408 2yrmA 43 18.38 2eppA 66 18.48 1a99A 344 19.09 c.94.1.1 35812 1z3aA 168 19.46 c.97.1.2 124396 2g84A 197 19.48 c.97.1.2 134766 1m1qA 91 19.86 a.138.1.3 74419 1pjcA 361 20.87 c.2.1.4,c.23.12.2 30101,31361 2fr5A 146 25.79 c.97.1.1 133965 1j55A 95 26.01 a.39.1.2 77078 2b3jA 159 26.07 c.97.1.2 127787 1c8cA 64 26.30 b.34.13.1 59084 2i3sB 36 26.56 2nx8A 179 27.47 2h21A 440 28.34 a.166.1.1,b.85.7.3 135976,135977 3bjuA 521 29.51 1jvrA 137 30.00 a.61.1.2 18132 2px0A 296 30.34 1wwrA 171 31.05 c.97.1.2 121366 1njqA 39 31.44 g.37.1.3 85822 2jwhA 48 33.73 1kv4A 42 35.96 j.4.1.3 73051 1rc9A 221 37.37 d.111.1.1,g.19.1.2 111765,111766 2p09A 78 38.27 2iazA 113 38.28 1uwzA 136 38.64 c.97.1.1 108081 1xyiA 66 40.90 1vq2A 193 42.82 c.97.1.2 114004 2pnkA 428 42.91 2pqxA 245 43.07 1znfA 25 43.27 g.37.1.1 45036 1q0eA 152 44.74 b.1.8.1 95504 1sg1X 161 44.93 g.24.1.1,g.24.1.1,g.24.1.1,g.24.1.1 105515,105516,105517,105518 1n28A 124 44.99 a.133.1.2 91550 1r5tA 142 45.19 c.97.1.1 104812 1z5yE 149 46.50 c.47.1.10 124498 1rp4A 389 48.46 a.227.1.1 105027 2q01A 497 50.79 1dxsA 80 50.82 a.60.1.2 17944 1tr0A 108 55.13 d.58.4.4 107261 2oy9A 98 58.39 2dx8A 67 58.66 1yirA 408 60.53 c.1.17.2,d.41.2.2 123330,123331 1sk4A 163 63.04 d.118.1.1 105664 2g2bA 150 64.38 2f2lX 167 65.38 d.118.1.1 132844 1j0pA 108 65.97 a.138.1.1 90743 2q1fA 1022 65.98 1brvA 32 67.08 j.33.1.1 46235 2b3yA 888 67.66 c.8.2.1,c.83.1.1 127803,127804 1dq3A 454 67.98 b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 2pd2A 108 68.33 2axtZ 62 70.08 1uw1A 80 70.79 k.42.1.1 100069 2dmiA 115 71.34 1extA 162 77.30 g.24.1.1,g.24.1.1,g.24.1.1 44900,44901,44902 1axiA 191 77.89 a.26.1.1 16832 1le6A 123 79.60 a.133.1.2 73862 2jrpA 81 79.75 2a2mA 258 79.81 a.132.1.3 126039 2d58A 107 80.08 1ykhA 108 80.54 a.252.1.2 123518 1vavA 222 85.81 b.29.1.18 108472 1ryaA 160 86.45 d.113.1.5 105122 2g3kA 94 89.17 a.24.28.1 134562 1up9A 107 89.42 a.138.1.1 113390