# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oqcA 125 5.79e-20 a.24.15.1 87264 1jr8A 117 1.29e-19 a.24.15.1 67115 2nytA 190 1.026 1ctt 294 1.498 1ovxA 67 4.125 g.39.1.11 93622 2ds5A 51 4.633 g.39.1.11 131681 1cc8A 73 5.247 d.58.17.1 39343 1cttA 294 5.381 c.97.1.1,c.97.1.1 36022,36023 1wkqA 164 6.024 c.97.1.2 109393 2aj0A 71 6.270 3b8fA 142 6.721 1nowA 507 6.805 c.1.8.6,d.92.2.1 85936,85937 1wn5A 130 7.072 c.97.1.1 121082 2z3hA 130 8.102 2q3pA 112 9.663 d.58.4.4 139798 1c8cA 64 10.35 b.34.13.1 59084 2h21A 440 10.45 a.166.1.1,b.85.7.3 135976,135977 1jvrA 137 10.89 a.61.1.2 18132 2vlgA 111 11.24 2c5sA 413 11.57 c.26.2.6,d.308.1.1 129950,129951 2hvwA 184 11.89 1wlzA 105 12.36 a.39.1.7 121024 2a8nA 144 12.37 c.97.1.2 126408 2eppA 66 12.39 2g84A 197 13.26 c.97.1.2 134766 2qycA 103 13.34 2nx8A 179 13.93 1z3aA 168 14.04 c.97.1.2 124396 2fqhA 109 14.60 2p09A 78 15.12 1xyiA 66 17.46 1a99A 344 17.69 c.94.1.1 35812 2b3jA 159 19.10 c.97.1.2 127787 1wwrA 171 19.33 c.97.1.2 121366 2dx8A 67 20.23 2jwhA 48 20.24 2ahmA 88 20.65 a.8.9.1 126760 1rc9A 221 21.11 d.111.1.1,g.19.1.2 111765,111766 1dq3A 454 21.26 b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1uw1A 80 21.46 k.42.1.1 100069 2i3sB 36 22.18 2fr5A 146 22.44 c.97.1.1 133965 1r5tA 142 24.43 c.97.1.1 104812 1uwzA 136 25.45 c.97.1.1 108081 1rwjA 82 25.76 a.138.1.1 105114 2yrmA 43 28.24 2px0A 296 28.58 1rp4A 389 33.15 a.227.1.1 105027 1brvA 32 35.28 j.33.1.1 46235 2f2lX 167 35.50 d.118.1.1 132844 1kv4A 42 35.85 j.4.1.3 73051 1vq2A 193 39.00 c.97.1.2 114004 1tr0A 108 39.69 d.58.4.4 107261 1dxsA 80 40.51 a.60.1.2 17944 2pd2A 108 41.75 1vavA 222 42.01 b.29.1.18 108472 3bjuA 521 42.72 2pnkA 428 44.48 2axtZ 62 45.71 1njqA 39 46.32 g.37.1.3 85822 1znfA 25 46.99 g.37.1.1 45036 1ryaA 160 47.43 d.113.1.5 105122 2q01A 497 49.32 1xtaA 221 50.16 1osdA 72 50.74 d.58.17.1 104022 1smbA 154 51.78 d.111.1.1 105756 1pjcA 361 52.47 c.2.1.4,c.23.12.2 30101,31361 2pqxA 245 54.64 1v1dA 31 57.08 j.6.1.1 119817 1wixA 164 58.73 a.40.3.1 114683 2z69A 154 59.78 2oy9A 98 61.03 1dm9A 133 62.25 d.66.1.3 39560 1lu4A 136 63.39 c.47.1.10 91124 1tuvA 114 63.49 d.58.4.11 112665 1q0eA 152 64.58 b.1.8.1 95504 2iazA 113 66.08 1vp6A 138 66.51 b.82.3.2 113939 1j0pA 108 67.69 a.138.1.1 90743 1hw1A 239 68.61 a.4.5.6,a.78.1.1 16111,18441 1up9A 107 70.47 a.138.1.1 113390 2pqqA 149 71.87 1sk4A 163 73.06 d.118.1.1 105664 2z4iA 233 73.98 1wilA 89 77.92 g.50.1.3 114676 1z5yE 149 78.30 c.47.1.10 124498 1extA 162 80.46 g.24.1.1,g.24.1.1,g.24.1.1 44900,44901,44902 1sg1X 161 83.17 g.24.1.1,g.24.1.1,g.24.1.1,g.24.1.1 105515,105516,105517,105518 2qh7A 76 85.00 2r7hA 177 87.11 1hruA 188 87.64 d.115.1.1 40926 1qnxA 209 89.41 d.111.1.1 40914 2j9wA 102 89.71