# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oqcA 125 3.40e-19 a.24.15.1 87264 1jr8A 117 8.31e-19 a.24.15.1 67115 2nytA 190 1.796 1ctt 294 1.807 1nowA 507 3.432 c.1.8.6,d.92.2.1 85936,85937 1ovxA 67 3.536 g.39.1.11 93622 2aj0A 71 4.004 1wkqA 164 4.481 c.97.1.2 109393 1cc8A 73 4.712 d.58.17.1 39343 2ds5A 51 4.770 g.39.1.11 131681 2q3pA 112 4.853 d.58.4.4 139798 2qycA 103 5.312 1cttA 294 6.138 c.97.1.1,c.97.1.1 36022,36023 1wn5A 130 7.467 c.97.1.1 121082 2z3hA 130 7.750 1c8cA 64 8.703 b.34.13.1 59084 2h21A 440 9.96 a.166.1.1,b.85.7.3 135976,135977 3b8fA 142 10.14 2c5sA 413 10.34 c.26.2.6,d.308.1.1 129950,129951 2eppA 66 10.46 2hvwA 184 10.47 2ahmA 88 10.83 a.8.9.1 126760 2fqhA 109 11.12 2q01A 497 13.60 2vlgA 111 13.63 1rc9A 221 14.37 d.111.1.1,g.19.1.2 111765,111766 1xyiA 66 14.49 2fr5A 146 14.73 c.97.1.1 133965 1rp4A 389 18.20 a.227.1.1 105027 2nx8A 179 18.31 1z3aA 168 20.41 c.97.1.2 124396 1j55A 95 21.47 a.39.1.2 77078 2i3sB 36 22.06 2a8nA 144 22.72 c.97.1.2 126408 2b3jA 159 22.81 c.97.1.2 127787 1dxsA 80 23.36 a.60.1.2 17944 2jwhA 48 23.54 2g84A 197 23.59 c.97.1.2 134766 1uwzA 136 24.15 c.97.1.1 108081 1r5tA 142 24.38 c.97.1.1 104812 1vq2A 193 24.97 c.97.1.2 114004 1wlzA 105 25.95 a.39.1.7 121024 2p09A 78 26.09 1tr0A 108 26.61 d.58.4.4 107261 1wwrA 171 28.71 c.97.1.2 121366 2yrmA 43 29.12 1pjcA 361 29.21 c.2.1.4,c.23.12.2 30101,31361 2px0A 296 29.68 2pd2A 108 32.06 2oy9A 98 33.68 2dx8A 67 37.34 1smbA 154 37.46 d.111.1.1 105756 2f2lX 167 38.25 d.118.1.1 132844 1uw1A 80 39.55 k.42.1.1 100069 1sk4A 163 39.80 d.118.1.1 105664 1xtaA 221 41.19 1jvrA 137 42.33 a.61.1.2 18132 2d58A 107 44.56 1ryaA 160 45.52 d.113.1.5 105122 1kv4A 42 46.31 j.4.1.3 73051 2iazA 113 47.52 2p5vA 162 47.63 1njqA 39 47.85 g.37.1.3 85822 1rwjA 82 48.62 a.138.1.1 105114 1osdA 72 50.66 d.58.17.1 104022 2pnkA 428 51.66 1z5yE 149 52.23 c.47.1.10 124498 1ykhA 108 53.11 a.252.1.2 123518 1qnxA 209 53.23 d.111.1.1 40914 3bjuA 521 55.06 1gyxA 76 55.09 d.80.1.1 76387 2axtZ 62 56.22 2rieA 160 59.50 2ezhA 75 59.67 a.4.1.2 16029 1a99A 344 61.62 c.94.1.1 35812 1twfL 70 61.75 g.41.9.2 112737 1brvA 32 62.79 j.33.1.1 46235 1sg1X 161 63.06 g.24.1.1,g.24.1.1,g.24.1.1,g.24.1.1 105515,105516,105517,105518 1fe0A 68 64.33 d.58.17.1 39345 1le6A 123 65.17 a.133.1.2 73862 2prrA 197 66.87 1dm9A 133 68.36 d.66.1.3 39560 2g3kA 94 68.49 a.24.28.1 134562 2pqxA 245 69.58 2pqqA 149 69.97 1xfiA 367 70.01 e.50.1.1 109584 1wilA 89 73.68 g.50.1.3 114676 1pdgA 109 75.42 g.17.1.1 44748 3c1lA 188 75.51 1f8fA 371 77.28 b.35.1.2,c.2.1.1 83246,83247 2oyoA 196 79.12 2ijlA 135 80.17 2g2bA 150 80.64 1wy9A 147 81.04 1tuvA 114 81.33 d.58.4.11 112665 1znfA 25 81.34 g.37.1.1 45036 1v1dA 31 82.01 j.6.1.1 119817 1up9A 107 82.39 a.138.1.1 113390 2r7hA 177 84.08 2z4iA 233 85.58 2pfxA 191 89.20