# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1oqcA	125	7.37e-19	a.24.15.1	87264
1jr8A	117	2.07e-18	a.24.15.1	67115
2fqhA	109	3.115		
2nytA	190	3.816		
1n28A	124	5.786	a.133.1.2	91550
1wkqA	164	8.922	c.97.1.2	109393
2aj0A	71	9.234		
1vavA	222	13.16	b.29.1.18	108472
1le6A	123	13.26	a.133.1.2	73862
1cc8A	73	17.07	d.58.17.1	39343
1wn5A	130	18.81	c.97.1.1	121082
1uufA	369	19.26	b.35.1.2,c.2.1.1	100006,100007
1r5tA	142	22.78	c.97.1.1	104812
1nowA	507	23.09	c.1.8.6,d.92.2.1	85936,85937
1ae7A	119	24.50	a.133.1.2	19553
2uuuA	584	25.52		
1c8cA	64	26.97	b.34.13.1	59084
1vq2A	193	30.20	c.97.1.2	114004
1uwzA	136	35.45	c.97.1.1	108081
2fr5A	146	35.98	c.97.1.1	133965
2z3hA	130	36.60		
2jwhA	48	41.16		
1xyiA	66	42.51		
1ppjC	379	45.10	f.32.1.1,f.21.1.2	104256,104257
1pjcA	361	48.21	c.2.1.4,c.23.12.2	30101,31361
1a22A	180	49.42	a.26.1.1	16833
2gmyA	153	51.67	a.152.1.3	135398
2hvwA	184	54.07		
2bbkL	125	55.93	g.21.1.1	44882
1knyA	253	56.81	a.24.16.1,d.218.1.1	75896,75897
2czrA	226	57.07		
2ahmA	88	57.59	a.8.9.1	126760
2ie4A	589	58.31	a.118.1.2	137291
1lw1A	177	59.48	a.152.1.1	74290
1xvwA	160	59.55	c.47.1.10	122387
1y2tA	142	59.75	b.97.1.2	116407
3b8fA	142	64.09		
2b3jA	159	64.84	c.97.1.2	127787
1a2aA	122	69.26	a.133.1.2	19540
1z5yE	149	69.46	c.47.1.10	124498
1ohpA	125	74.13	d.17.4.3	118702
2z69A	154	74.51		
1qw9A	502	75.67	b.71.1.2,c.1.8.3	96466,96467
2nn4A	72	75.68		
2px0A	296	76.84		
1osdA	72	79.56	d.58.17.1	104022
1i5gA	144	80.32	c.47.1.10	61784
2oizD	135	80.40		
1pu6A	218	82.54	a.96.1.5	95123
2ijcA	145	82.56	a.152.1.3	137465
2dulA	378	82.64		
1axiA	191	82.99	a.26.1.1	16832
2a8nA	144	83.77	c.97.1.2	126408
2cdcA	366	84.28		
1y7bA	542	85.83	b.29.1.23,b.67.2.1	122687,122688
2hl7A	84	87.66		
2g84A	197	88.59	c.97.1.2	134766
1j0pA	108	89.95	a.138.1.1	90743