# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oqcA 125 4.27e-22 a.24.15.1 87264 1jr8A 117 1.78e-21 a.24.15.1 67115 2aj0A 71 2.718 2nytA 190 3.058 2q3pA 112 3.139 d.58.4.4 139798 2qycA 103 4.495 2yrmA 43 6.767 2fqhA 109 7.927 2px0A 296 8.585 1cc8A 73 10.11 d.58.17.1 39343 2eppA 66 10.98 1pdgA 109 12.92 g.17.1.1 44748 3b8fA 142 14.34 1tr0A 108 15.68 d.58.4.4 107261 1m1qA 91 16.26 a.138.1.3 74419 2uuuA 584 16.34 1wkqA 164 16.35 c.97.1.2 109393 1njqA 39 17.75 g.37.1.3 85822 1dxsA 80 20.62 a.60.1.2 17944 2ie4A 589 23.38 a.118.1.2 137291 1ovxA 67 23.40 g.39.1.11 93622 2ds5A 51 24.73 g.39.1.11 131681 1wn5A 130 24.83 c.97.1.1 121082 2z3hA 130 24.90 1znfA 25 32.57 g.37.1.1 45036 2dmiA 115 33.32 2ahmA 88 33.50 a.8.9.1 126760 2pqxA 245 34.68 1rwjA 82 37.31 a.138.1.1 105114 2dsyA 87 37.35 1ctt 294 37.99 1jixA 351 38.76 c.87.1.1 63081 1nowA 507 40.13 c.1.8.6,d.92.2.1 85936,85937 1sg1X 161 40.56 g.24.1.1,g.24.1.1,g.24.1.1,g.24.1.1 105515,105516,105517,105518 1a22A 180 42.85 a.26.1.1 16833 1r5tA 142 42.96 c.97.1.1 104812 1pxvA 183 47.14 d.3.1.1 95301 2f4mA 295 49.30 2vlgA 111 49.64 1pcxA 810 49.77 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 94497,94498,94499,94500,94501 2gcfA 73 49.84 1wq8A 110 50.00 g.17.1.1 114832 2p6xA 309 50.30 2czrA 226 51.09 2q01A 497 51.94 2iazA 113 52.21 1kqhA 38 52.35 g.3.6.2 68810 1qgrB 27 52.36 1le6A 123 57.01 a.133.1.2 73862 1osdA 72 58.16 d.58.17.1 104022 1up9A 107 58.62 a.138.1.1 113390 1fe0A 68 59.30 d.58.17.1 39345 2bmoB 194 59.39 d.17.4.4 128806 1mkkA 96 59.40 g.17.1.1 79240 2elxA 35 60.65 1c8cA 64 61.07 b.34.13.1 59084 2dx8A 67 61.25 2pnkA 428 61.89 1axiA 191 65.21 a.26.1.1 16832 2fr5A 146 66.44 c.97.1.1 133965 2ewcA 126 66.60 d.79.1.1 132454 2hl7A 84 67.22 1vq2A 193 67.35 c.97.1.2 114004 1uwzA 136 67.86 c.97.1.1 108081 2hvwA 184 68.26 1n28A 124 68.26 a.133.1.2 91550 1gyxA 76 68.60 d.80.1.1 76387 3beyA 96 68.86 1gw5S 142 69.55 d.110.4.2 70633 1v32A 101 70.46 a.42.1.1 100277 1t5rA 284 70.49 f.6.1.1 106465 2z4iA 233 70.68 1ae7A 119 71.28 a.133.1.2 19553 1hruA 188 79.05 d.115.1.1 40926 1du3A 130 83.19 g.24.1.1,g.24.1.1,g.24.1.1 44927,44928,44929 2g84A 197 86.79 c.97.1.2 134766 1vkhA 273 88.44 c.69.1.32 108662 1wj7A 104 88.45 a.5.2.1 120976 1huwA 191 88.90 a.26.1.1 16831