# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oqcA 125 1.05e-17 a.24.15.1 87264 1jr8A 117 3.08e-17 a.24.15.1 67115 2e7pA 116 1.896 2ie4A 589 4.328 a.118.1.2 137291 1y7qA 98 4.376 a.28.3.2 122714 1j09A 468 5.306 a.97.1.1,c.26.1.1 77025,77026 1p5zB 263 7.961 c.37.1.1 87815 2riqA 160 8.557 1tv9A 335 11.70 a.60.6.1,a.60.12.1,d.218.1.2 112675,112676,112677 1b3uA 588 12.23 a.118.1.2 19135 2zihA 347 13.62 2brxA 244 14.27 c.73.1.3 129028 1su0B 159 14.78 d.224.1.2 106015 1lm5A 214 16.43 d.211.2.1 74029 2v2gA 233 18.29 1so2A 420 18.94 a.211.1.2 98936 1nmuB 104 19.28 d.79.3.1 80666 2h5nA 133 20.18 1ttzA 87 20.48 c.47.1.1 107309 2pkeA 251 20.50 2d5rA 252 21.99 1vraB 215 22.21 1zm7A 230 24.05 1d3yA 301 25.51 e.12.1.1 43252 1y2kA 349 25.63 a.211.1.2 122571 2a19B 284 26.27 2bl0B 145 26.57 1fk5A 93 26.70 a.52.1.1 59866 2rdzA 452 27.97 2fp4B 395 28.35 c.23.4.1,d.142.1.4 133897,133898 1rzlA 91 30.37 a.52.1.1 17817 1vqoF 120 30.50 d.79.3.1 120368 1t1jA 125 30.52 c.23.14.2 106249 2bcqA 335 30.65 a.60.6.1,a.60.12.1,d.218.1.2 128304,128305,128306 2fc3A 124 30.95 1tbfA 347 31.39 a.211.1.2 106743 1zgyA 272 33.05 a.123.1.1 125064 2i88A 191 33.16 1gsjA 258 33.30 c.73.1.2 70397 2oe3A 114 34.15 2jacA 110 34.53 1nsj 205 34.62 1g8pA 350 35.79 c.37.1.20 60376 2etbA 256 35.89 1xccA 220 36.54 c.47.1.10 115113 2q22A 139 37.23 2r6r1 338 38.34 1wtyA 119 39.11 a.24.16.2 114880 2o38A 120 41.45 2f5xA 312 41.97 1zklA 353 42.62 2hkuA 215 44.40 2o70A 174 44.62 1ly1A 181 45.13 c.37.1.1 74334 1iqqA 200 45.20 d.124.1.1 66274 2p4fA 299 45.37 2fmpA 335 45.59 a.60.6.1,a.60.12.1,d.218.1.2 133786,133787,133788 2aifA 135 47.29 1tffA 234 47.68 d.3.1.11 106854 2h8zA 359 48.69 2pocA 367 48.98 2pvbA 107 50.06 a.39.1.4 17205 2i4iA 417 50.07 1ne9A 335 50.18 d.108.1.4,d.108.1.4 91839,91840 2qacA 146 51.70 1zzoA 136 52.64 c.47.1.10 125913 1r8sE 203 52.69 a.118.3.1 97248 2q4wA 524 53.29 1t9iA 163 53.39 d.95.2.1 112360 1prxA 224 53.80 c.47.1.10 33076 2gv5A 161 55.39 2qneA 495 55.96 1wy0A 342 56.23 2hzfA 114 56.61 1wy9A 147 56.65 1midA 91 57.97 a.52.1.1 91280 1j7xA 302 58.66 c.14.1.2 66425 1yt8A 539 59.80 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2dklA 85 60.56 a.5.2.1 131555 1x52A 124 61.08 1rnfA 120 61.26 d.5.1.1 37291 2dkyA 91 62.48 1r3jC 124 63.03 f.14.1.1 96932 1t5iA 172 63.25 c.37.1.19 106450 2rjiA 84 63.52 1ka1A 357 63.56 e.7.1.1 68369 1z6mA 175 63.75 c.47.1.13 124529 2od5A 116 63.75 1ltqA 301 63.86 c.108.1.9,c.37.1.1 78208,78209 1ku1A 230 63.90 a.118.3.1 72996 2c0nA 203 64.30 2np5A 203 65.20 a.4.1.9,a.121.1.1 138424,138425 2zfyA 234 65.47 2exrA 524 66.03 1t6cA 315 66.25 c.55.1.8,c.55.1.8 106558,106559 2ih3C 122 67.83 2a6cA 83 68.00 a.35.1.13 126236 2oqoA 200 68.20 1yzsA 121 71.43 2jgqA 233 72.20 1xbiA 120 73.00 d.79.3.1 121840 2flsA 132 73.09 2fk8A 318 74.22 c.66.1.18 133648 2fwhA 134 74.69 c.47.1.1 134242 1sqgA 429 76.60 a.79.1.3,c.66.1.38 105912,105913 2iwtA 125 80.65 2j85A 122 81.49 d.321.1.1 138133 1l2tA 235 81.99 c.37.1.12 73514 2q4kA 251 83.27 d.86.1.2 139864 1llnA 262 83.98 d.165.1.1 84625 2ifqA 105 84.30 c.47.1.1 137343 1zvdA 380 84.66 1zavA 180 85.20 1wdcB 156 85.53 a.39.1.5 17302 1srvA 145 85.56 c.8.5.1 30817 1n46A 258 86.04 a.123.1.1 85315 1f7lA 121 86.19 d.150.1.2 59666 1lv2A 229 87.74 a.123.1.1 78230 1ysjA 404 87.84 c.56.5.4,d.58.19.1 123975,123976 1m7sA 484 88.50 e.5.1.1 74574 2oxcA 230 89.42 1bplB 294 89.57 b.71.1.1 27716