# List of top-scoring protein chains for T0396.t04-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1oqcA	125	7.11e-12	a.24.15.1	87264
2hj3A	125	3.64e-11		
1jr8A	117	1.99e-10	a.24.15.1	67115
2d30A	141	40.56	c.97.1.1	131190
2fqhA	109	46.02		
1c7nA	399	59.31	c.67.1.3	34413
1dgjA	907	63.32	a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1	17909,37694,38585,41415
2elvA	36	65.26		
1cc8A	73	69.35	d.58.17.1	39343
2fb6A	117	74.87		
2cshA	110	76.47	g.37.1.1,g.37.1.1	130769,130770
1pyoB	105	86.49		
2p2cB	106	86.78